View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2327_low_16 (Length: 356)
Name: NF2327_low_16
Description: NF2327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2327_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 346
Target Start/End: Original strand, 14549940 - 14550274
Alignment:
| Q |
16 |
caattagcctcgacaatttatctgaatgtgcaaattctctcctcggtatcacaatgccattaaaatgttaatggtttgatagttgaaagtaatttgcagc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14549940 |
caattagcctcgacaatttatctgaatgtgcaaattctctcctaggtatcacaatgccattaaaatgttaatggtttgatagttgaaagtaatttgcagc |
14550039 |
T |
|
| Q |
116 |
aatgag----tattggtattgcaagatattttcatttaaaaatttatccttctaattatcatcaagcattcagcagaaccataataatatttcttaggca |
211 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14550040 |
aatgagaaagtattggtattgcaagatattttcatttaaaaatttatccttctaattatcatcaagcattcagcagaaccataataatatttcttaggca |
14550139 |
T |
|
| Q |
212 |
ttgtattattctctaagtaacaaactataaagtagtcataatctcaactgttaaagaaggaaacgaactatgaagtagttaaagtttcactgttgatttc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14550140 |
ttgtattattctctaagtaacaaactataaagtagtcataatctcaactgttaaagaaggaaacgaactatgaagtagttaaagtttcactgttgatttc |
14550239 |
T |
|
| Q |
312 |
caatcaataattataattccgcactgttttctctg |
346 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
14550240 |
caatcaataattataattccgcactgttttctctg |
14550274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 346
Target Start/End: Original strand, 37527415 - 37527747
Alignment:
| Q |
16 |
caattagcctcgacaatttatctgaatgtgcaaattctctcctcggtatcacaatgccattaaaatgttaatggtttgatagttgaaagtaatttgcagc |
115 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37527415 |
caattagccttgacaattcatctgaatgtgcaaattctctccttggtatcacaatgccattaaaatgttaatggtttgatagttgaaagtaatttgcagc |
37527514 |
T |
|
| Q |
116 |
aatg----agtattggtattgcaagata--ttttcatttaaaaatttatccttctaattatcatcaagcattcagcagaaccataataatatttcttagg |
209 |
Q |
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|||| |||||||||| ||||||||| ||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
37527515 |
aatgagaaagtattggtagtgcaagatattttttcatttaaaaatttatatttctaattatcatc-agcactcagcagaaccataataatatttcttagg |
37527613 |
T |
|
| Q |
210 |
cattgtattattctctaagtaacaaactataaagtagtcataatctcaactgttaaagaaggaaacgaactatgaagtagttaaagtttcactgttgatt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| ||||||||||||| |||| |||||||||||| |
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| T |
37527614 |
cattgtattattctctaagtaacaaactataaagtaattataatctcaactgttgaagaaggaaacaaactatgaagtag---aagtctcactgttgatt |
37527710 |
T |
|
| Q |
310 |
tccaatcaataattataattccgcactgttttctctg |
346 |
Q |
| |
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||||||||| || ||||||| |||||||||||||||| |
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| T |
37527711 |
tccaatcaagaaatataatttcgcactgttttctctg |
37527747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 346
Target Start/End: Original strand, 37589589 - 37589927
Alignment:
| Q |
16 |
caattagcctcgacaatttatctgaatgtgcaaattctctcctcggtatcacaatgccattaaaatgttaat---ggtttgatagttgaaagtaatttgc |
112 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37589589 |
caattagccttgacaattcatctgaatgtgcaaattctctccttggtatcacaatgccattaaaatgttaataatggtttgatagttgaaagtaatttgc |
37589688 |
T |
|
| Q |
113 |
agcaatgag----tattggtattgcaagatatttt--catttaaaaatttatccttctaattatcatcaagcattcagcagaaccataataatatttctt |
206 |
Q |
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||||||||| |||||||| ||||||||||||| ||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
37589689 |
agcaatgagaaactattggtagtgcaagatattttttcatttaaaaatttatatttctaattatcatca-gcactcagcagaaccataataatatttctt |
37589787 |
T |
|
| Q |
207 |
aggcattgtattattctctaagtaacaaactataaagtagtcataatctcaactgttaaagaaggaaacgaactatgaagtagttaaagtttcactgttg |
306 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| |||||||||| ||||||||| ||||||||| |
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| T |
37589788 |
aggcattgtattattctctaagtaacaaactataaagtaattataatctcaactgttgaagaaggaaacaaactatgaagaagttaaagtctcactgttg |
37589887 |
T |
|
| Q |
307 |
atttccaatcaataattataattccgcactgttttctctg |
346 |
Q |
| |
|
|||||||||||| || ||||||| |||||||||||||||| |
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| T |
37589888 |
atttccaatcaagaaatataatttcgcactgttttctctg |
37589927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 16 - 345
Target Start/End: Original strand, 37691867 - 37692192
Alignment:
| Q |
16 |
caattagcctcgacaatttatctgaatgtgcaaattctctcctcggtatcacaatgccattaaaatgttaatggtttgatagttgaaagtaatttgcagc |
115 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37691867 |
caattagccttgacaattcatctgaatgtgcaaattctctccttggtatcacaatgccattaaaatgttaatggtttgatagttgaaagtaatttgcagc |
37691966 |
T |
|
| Q |
116 |
aatgag----tattggtattgcaagata--ttttcatttaaaaatttatccttctaattatcatcaagcattcagcagaaccataataatatttcttagg |
209 |
Q |
| |
|
|||||| |||||||| ||||||||| ||||||||||||||||||| |||||||||| ||| |||| ||||||||||||||||||||||||||||| |
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| T |
37691967 |
aatgagaaaatattggtagtgcaagatattttttcatttaaaaatttatatttctaattatgatc-agcactcagcagaaccataataatatttcttagg |
37692065 |
T |
|
| Q |
210 |
cattgtattattctctaagtaacaaactataaagtagtcataatctcaactgttaaagaaggaaacgaactatgaagtagttaaagtttcactgttgatt |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| | |||||||||| |||||||||||| |
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| T |
37692066 |
cattgtattattctctaagtaacaaactataaagtaattataatctcaactgttgaagaaggaaac---------aatagttaaagtctcactgttgatt |
37692156 |
T |
|
| Q |
310 |
tccaatcaataattataattccgcactgttttctct |
345 |
Q |
| |
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|||||| || || ||||||| |||||||||| |||| |
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| T |
37692157 |
tccaattaagaaatataatttcgcactgtttcctct |
37692192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 143
Target Start/End: Original strand, 37795997 - 37796074
Alignment:
| Q |
70 |
tgccattaaaatgttaatggtttgatagttgaaagtaatttgcagcaatgag----tattggtattgcaagatatttt |
143 |
Q |
| |
|
||||||||||||| | |||||| |||||||||||||||||||| ||||||| ||||||| ||||||||||||| |
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|
| T |
37795997 |
tgccattaaaatgatgttggtttaatagttgaaagtaatttgcaccaatgagaaattattggttgtgcaagatatttt |
37796074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 37620181 - 37620233
Alignment:
| Q |
69 |
atgccattaaaatgttaatggtttgatagttgaaagtaatttgcagcaatgag |
121 |
Q |
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|||||||||||||| | |||||| |||||||||||||||||| | ||||||| |
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| T |
37620181 |
atgccattaaaatgatgttggtttaatagttgaaagtaatttggaccaatgag |
37620233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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