View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2327_low_17 (Length: 348)
Name: NF2327_low_17
Description: NF2327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2327_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 13 - 332
Target Start/End: Complemental strand, 580916 - 580597
Alignment:
| Q |
13 |
aatatacttacctttgatgattcgaatttgatagattttgagtgactgaattcaccaagaagtgcagcagcatggaaatctgacatataacttacaaagt |
112 |
Q |
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| T |
580916 |
aatatacttacctttgatgactcgaatttgatagattttgagtgactgaattcaccaagaagtgcagcagcatggaaatctgacatataacttacaaagt |
580817 |
T |
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| Q |
113 |
gttggctctcatataaattgattttagccgaagcatggcatggggacttaattataatgttttgtgatatatcaaaaccgcaaaaactgaattctttcag |
212 |
Q |
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| T |
580816 |
gttggctctcatataaattgattttagctgaagcatggcatggggacttaattataatgttttgtgatatatcaaaaccgcaaaaactgaattctttcag |
580717 |
T |
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| Q |
213 |
atcctcagaatcagggaagcagataaatgatttgtcacgtttacaaggaacaccgacgctatgttcgattgaaatgctttcaagtagaggcgcgtatatc |
312 |
Q |
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| T |
580716 |
atcctcagaatcagggaagcagataaatgatttgtcacgtttacaaggaacaccgacgctatgttcgattgaaatgctttcaagtagaggcgcgtatatc |
580617 |
T |
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| Q |
313 |
ataaccaaagatgtatcaac |
332 |
Q |
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| T |
580616 |
ataaccaaagatgtatcaac |
580597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 1214381 - 1214316
Alignment:
| Q |
118 |
ctctcatataaattgattttagccgaagcatggcatggggacttaattataatgttttgtgatata |
183 |
Q |
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| T |
1214381 |
ctctcatgtaaaatgattttagtagaagcatggcatggggacgtcattaaaatgtgttgtggtata |
1214316 |
T |
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