View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2327_low_2 (Length: 882)
Name: NF2327_low_2
Description: NF2327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2327_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Complemental strand, 26648136 - 26647619
Alignment:
| Q |
1 |
gagtaagcatctcgtcattaggaacatatgttattctatgtttagcatgtcttagttgattcggnnnnnnnnnnnnnnnnnnnnngaagcaatgtcttgg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26648136 |
gagtaagcatctcgtcattaggaacatatgttattctatgtttagcatgtcttagttgattcggttttttatttgttttgtttttgaagcaatgtcttgg |
26648037 |
T |
|
| Q |
101 |
ttaattagatattcatcatcatttgttaacccaaagggcattacgagatattcataatggccttcatgagttcaaattatattcagtcttgtgaatatca |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26648036 |
ttaattagatattcatcatcatttgttaacccaaagggcattacgagatattcataatggccttcatgagttcaaa----attcagtcttgtgaatatca |
26647941 |
T |
|
| Q |
201 |
ccctctttcattcgaatctgatgataccctgatttcagcatactctccctcaggttgagttcgaaatgccaaataattgacacaaacaatagtagcaaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
26647940 |
ccctctttcattcgaatctgatgataccctgatttcagcatactctccctcaggttgagctcgaaatgccaaataattgacacaaacaatagtagcaaaa |
26647841 |
T |
|
| Q |
301 |
agatataacagattatggtggcagctagtgatattttttatgtgaactgtgggataaattcccttataaatactgcaatgctaaacaatggatggattaa |
400 |
Q |
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|
|||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26647840 |
agatataacaaattatgatggcaactagtgatattttttatgtgaactgtgggataaattcccttataaatactgcaatgctaaacaatggatggattaa |
26647741 |
T |
|
| Q |
401 |
taatctccttgcagtaatgaaatttacaaagacgataaactatcaccaagagaatgccccccactgagatgagaatggttctcgctattccagtcccact |
500 |
Q |
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| T |
26647740 |
taatctccttgcagtaatgaaatttacaaagacgataaactatcaccaagagaatgccccccactgagatgagaatggttctcactattccagtcccact |
26647641 |
T |
|
| Q |
501 |
tccatctccaaaaccagtatgc |
522 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
26647640 |
tccatctccaaaaccagtatgc |
26647619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 13687083 - 13687139
Alignment:
| Q |
120 |
catttgttaacccaaagggcattacgagatattcataatggccttcatgagttcaaa |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13687083 |
catttgttaacccaaagggcattacgagatattcataatggccttcatgagttcaaa |
13687139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 13689035 - 13689091
Alignment:
| Q |
120 |
catttgttaacccaaagggcattacgagatattcataatggccttcatgagttcaaa |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13689035 |
catttgttaacccaaagggcattacgagatattcataatggccttcatgagttcaaa |
13689091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 808 - 864
Target Start/End: Complemental strand, 26647615 - 26647559
Alignment:
| Q |
808 |
gtatgtgcataccatgatgtacatggaagagtaaaacataagggaatttatcagtat |
864 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26647615 |
gtatgtgcataccatgatgtacatggaagagtaaaacataagggaatttatcagtat |
26647559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 22188703 - 22188653
Alignment:
| Q |
121 |
atttgttaacccaaagggcattacgagatattcataatggccttcatgagt |
171 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
22188703 |
atttgttaacacaaagggcattacgagatattcataacggccttcatgagt |
22188653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 8e-82; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 546 - 799
Target Start/End: Complemental strand, 36992855 - 36992609
Alignment:
| Q |
546 |
aaggatacttcccagggaatatcaaaatgtgtgtaatcttactattagatggttatccttgatctcatactaattttattgatcctagtgaacttgtgta |
645 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36992855 |
aaggatacttcccagggaatatcaaattgtgtgttatcttactattagatcgttatccttgatctcatactaattttattgatcctagtgaacttgtgta |
36992756 |
T |
|
| Q |
646 |
gtg--taattgtgatgaagtttataagtatgtagtcatgggaccagaaaatgacaaattgtgtgattaagttatggttttcctaaaggattaaaacttgg |
743 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| |||| |||||||||||||||||||||| | |
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|
| T |
36992755 |
gtgtataattgtgatgaagtttataagtatgtag-cat-------aaaaatgatgaattgtgtgattaagctatgattttcctaaaggattaaaactt-g |
36992665 |
T |
|
| Q |
744 |
taagtttaaagaatatatgttgggaagctaaatattagctataagaatatctaagg |
799 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||| |
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|
| T |
36992664 |
taagtttaaaggatatatgttggcaagctaaatattagatataagaaaatctaagg |
36992609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 553 - 798
Target Start/End: Complemental strand, 37002771 - 37002526
Alignment:
| Q |
553 |
cttcccagggaatatcaaaatgtgtgtaatcttactattagatggttatccttgatctcatactaattttattgatcctagtgaacttgtgtagtgtaat |
652 |
Q |
| |
|
|||||||||| |||||||| |||| || ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| || |
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|
| T |
37002771 |
cttcccagggcatatcaaattgtgcgtgatcttactattagatggttatccttgagctcttactaattttattgatcctagtgaacttgtgcagtgttat |
37002672 |
T |
|
| Q |
653 |
tgtgatgaagtttataagtatgtagtcatgggacc-agaaaatgacaaattgtgtgattaagttatggttttcctaaaggattaaaacttggtaagttta |
751 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||| ||||| ||||| |||||||| |
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|
| T |
37002671 |
tcagatgaagtttataagtatgtagtcatgggacctagaaaatgacgaattgtgtgattaagttatgattttcctaatggatttcaactt-gtaagtttt |
37002573 |
T |
|
| Q |
752 |
aagaatatatgttgggaagctaaatattagctataagaatatctaag |
798 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||| ||||||| |
|
|
| T |
37002572 |
aagaatatatgttggcaagctaaatattagatataagaaaatctaag |
37002526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 235 - 429
Target Start/End: Complemental strand, 36993343 - 36993151
Alignment:
| Q |
235 |
tcagcatactctccctcaggttgagttcgaaatgccaaataattgacacaaacaatagtagcaaaaagatataacagattatggtggcagctagtgatat |
334 |
Q |
| |
|
||||||||||||||| ||||||||| || |||| | |||||||||||||||| ||||||| ||||| ||||||||| |||||| ||||| |||||| || |
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|
| T |
36993343 |
tcagcatactctccc-caggttgagctctaaatactaaataattgacacaaataatagtaacaaaaggatataacaaattatgctggcaaatagtgacat |
36993245 |
T |
|
| Q |
335 |
tttttatgtgaactgtgggataaattcccttataaatactgcaatgctaaacaatggatggattaataatctccttgcagtaatgaaatttacaa |
429 |
Q |
| |
|
| || |||| ||||||||| |||||||||||| ||| |||| |||| |||||||| |||||||||||||||||||||||||||| || |||||| |
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|
| T |
36993244 |
tattgatgttaactgtggg-taaattcccttacaaagactggaatgttaaacaatttatggattaataatctccttgcagtaatggaacttacaa |
36993151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 37004144 - 37004049
Alignment:
| Q |
138 |
gcattacgagatattcataatggccttcatgagttcaaattatattcagtcttgtgaatatcaccctctttcattcgaatctgatgataccctgatttca |
237 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| |
|
|
| T |
37004144 |
gcattacgagatattcagaatgtccttcatgagttcaaa----attcagtcttgtgaatatcaccctctttcgtttgaatctgatgataccctaatttca |
37004049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 415 - 536
Target Start/End: Complemental strand, 36993141 - 36993021
Alignment:
| Q |
415 |
taatgaaatttacaaagacgataaactatcaccaagagaatgccccccactgagatgagaatggttctcgctattccagtcccacttccatctccaaaac |
514 |
Q |
| |
|
||||| || ||||||| | |||||||| |||| |||| ||| ||| | ||||||||||||||||||||| ||||||||||||| ||| || ||||||||| |
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|
| T |
36993141 |
taatggaacttacaaacatgataaactctcactaagaaaataccctc-actgagatgagaatggttctcactattccagtccctctttcaactccaaaac |
36993043 |
T |
|
| Q |
515 |
cagtatgctcttcttcacaccc |
536 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
36993042 |
cagtatgctcttcttcacaccc |
36993021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 128 - 237
Target Start/End: Complemental strand, 36993859 - 36993754
Alignment:
| Q |
128 |
aacccaaagggcattacgagatattcataatggccttcatgagttcaaattatattcagtcttgtgaatatcaccctctttcattcgaatctgatgatac |
227 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| || |||||||||||||| ||| |||||||||| ||| || |
|
|
| T |
36993859 |
aacccaaagggcattttgagatattcataatggccttcatgagttcaaat----ttcagttttttgaatatcaccctccttcgttcgaatctggtgacac |
36993764 |
T |
|
| Q |
228 |
cctgatttca |
237 |
Q |
| |
|
|||||||||| |
|
|
| T |
36993763 |
cctgatttca |
36993754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 809 - 860
Target Start/End: Complemental strand, 37002510 - 37002459
Alignment:
| Q |
809 |
tatgtgcataccatgatgtacatggaagagtaaaacataagggaatttatca |
860 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
37002510 |
tatgtgcatatcatgatgtacatgtcagagtaaaacagaagggaatttatca |
37002459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 37005085 - 37005041
Alignment:
| Q |
17 |
attaggaacatatgttattctatgtttagcatgtcttagttgatt |
61 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
37005085 |
attatgaacatatgttattgtatgtttggcatgtcttagttgatt |
37005041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 36995143 - 36995108
Alignment:
| Q |
22 |
gaacatatgttattctatgtttagcatgtcttagtt |
57 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36995143 |
gaacatatgttattgtatgtttagcatgtcttagtt |
36995108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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