View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2327_low_21 (Length: 310)
Name: NF2327_low_21
Description: NF2327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2327_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 48068853 - 48068565
Alignment:
| Q |
18 |
atttcacatcaacgtgttttaagtcacaaacttgtcttgaaataaagcagtgtgtcccagaacctcagagagcacaatatggaggtggcattatagtaaa |
117 |
Q |
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| T |
48068853 |
atttcacatcaatgtgttttaagtcacaaacttgtcttgaaataaaccagtgtgtcccagaacctcagagagcacaatatggaggtggcattatagtaaa |
48068754 |
T |
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| Q |
118 |
tccaggatttgatcacaacattaaggattggacagtgtttgagcatggaacaatcaaggaacgaacatcaaatgatggaaatacatttattgttgtcagc |
217 |
Q |
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| T |
48068753 |
tccaggatttgatcacaacattaaggattggacggtgtttgagcatggaacaatcaaggaacgaacatcaaatgatggaaatacatttattgttgtcagc |
48068654 |
T |
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| Q |
218 |
aacagaacacaaccattagatagtttatcacaaaaagtccaactggagaaagaaatgatatatattttttctggtaacctatgcttctc |
306 |
Q |
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| T |
48068653 |
aacagaacacaaccattagatagtttatcacaaaaagtccaactggagaaagaaatgatatatattttttctggtaacctatgtttctc |
48068565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 53 - 295
Target Start/End: Complemental strand, 48064162 - 48063920
Alignment:
| Q |
53 |
cttgaaataaagcagtgtgtcccagaacctcagagagcacaatatggaggtggcattatagtaaatccaggatttgatcacaacattaaggattggacag |
152 |
Q |
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| T |
48064162 |
cttgaaataaagcagtgtgtgacagaacctaagagggcacaatatggaggaggcattatagtaaatccaggatttgatcacaacataaagggttggagag |
48064063 |
T |
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| Q |
153 |
tgtttgagcatggaacaatcaaggaacgaacatcaaatgatggaaatacatttattgttgtcagcaacagaacacaaccattagatagtttatcacaaaa |
252 |
Q |
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| T |
48064062 |
tgtttggaaatggaacaatcgaggaacgaatatcaaatgatgaaaatagattcattgttgctagcaacagaagacaaacattggatggtttctcacagaa |
48063963 |
T |
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| Q |
253 |
agtccaactggagaaagaaatgatatatattttttctggtaac |
295 |
Q |
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| T |
48063962 |
ggtccaactgaagaaaggaatgatatacatgttttctggtaac |
48063920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 61 - 306
Target Start/End: Complemental strand, 48101407 - 48101162
Alignment:
| Q |
61 |
aaagcagtgtgtcccagaacctcagagagcacaatatggaggtggcattatagtaaatccaggatttgatcacaacattaaggattggacagtgtttgag |
160 |
Q |
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| T |
48101407 |
aaagcagtgtgtgacagaacctaagagggcacaatatgggggaggcattacagtaaatccaggatttgatcacaacataaatggctggaaagtgtttgga |
48101308 |
T |
|
| Q |
161 |
catggaacaatcaaggaacgaacatcaaatgatggaaatacatttattgttgtcagcaacagaacacaaccattagatagtttatcacaaaaagtccaac |
260 |
Q |
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| T |
48101307 |
aatggaacaatcgaggaacgagtatcaaacaacggaaatagattcattgttgccagcaacagaacacaaccattggatagtttttcacagaaggtccaac |
48101208 |
T |
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| Q |
261 |
tggagaaagaaatgatatatattttttctggtaacctatgcttctc |
306 |
Q |
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| T |
48101207 |
tgaagaaaggaatgatatatactttttctggtaacctatgtttctc |
48101162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 76 - 295
Target Start/End: Complemental strand, 48107808 - 48107589
Alignment:
| Q |
76 |
agaacctcagagagcacaatatggaggtggcattatagtaaatccaggatttgatcacaacattaaggattggacagtgtttgagcatggaacaatcaag |
175 |
Q |
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||||||||| ||||||||||||||||| || |||||||||||| | ||||||||||||||||| ||| ||||||||| |||| |||||||||| || |
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| T |
48107808 |
agaacctcaaagagcacaatatggagggggaattatagtaaattccggatttgatcacaacatagagggttggacagtatttggaaatggaacaattgag |
48107709 |
T |
|
| Q |
176 |
gaacgaacatcaaatgatggaaatacatttattgttgtcagcaacagaacacaaccattagatagtttatcacaaaaagtccaactggagaaagaaatga |
275 |
Q |
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| T |
48107708 |
gaacgtatatcaaatgatggaaatagattcattgttgccagcaaaagaacacaatcattagatagtttttcacaaacggttcagctagagaaaggattga |
48107609 |
T |
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| Q |
276 |
tatatattttttctggtaac |
295 |
Q |
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|||||| |||||| |||||| |
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| T |
48107608 |
tatatactttttcaggtaac |
48107589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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