View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2327_low_34 (Length: 229)
Name: NF2327_low_34
Description: NF2327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2327_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 5647579 - 5647374
Alignment:
| Q |
17 |
aggaatcttacaaaaggttaagacttttacactcatgaaggcaggactagaaagtaatttatctaaggtgatgaaagggtcctgttcaggattccgttga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5647579 |
aggaatcttacaaaaggttaagacttttacactcatgaaggcaggactagaaagtaatttatctaaggtgatgaaagggtcctgttcaggattccgttga |
5647480 |
T |
|
| Q |
117 |
ctaccaagccaaatattatcgcaaaagttttcaggaaggtccacaagacaatcactaataggaaaggcaaactttttaatattttgtgtatgcaatattg |
216 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5647479 |
ctaccaagccaaatattatcacaaaagttttcaggaaggtccacgagacaatcactaataggaaaggcaaactttttaatattttgtgtatgcaatattg |
5647380 |
T |
|
| Q |
217 |
atgatg |
222 |
Q |
| |
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|||||| |
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| T |
5647379 |
atgatg |
5647374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 24 - 222
Target Start/End: Original strand, 5605345 - 5605543
Alignment:
| Q |
24 |
ttacaaaaggttaagacttttacactcatgaaggcaggactagaaagtaatttatctaaggtgatgaaagggtcctgttcaggattccgttgactaccaa |
123 |
Q |
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|||||||||||||||| ||||||||| | |||||||||||||||||||| |||||||||||| ||||||| ||| |||||| ||| || |||| || |
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| T |
5605345 |
ttacaaaaggttaagatttttacactgacgaaggcaggactagaaagtactttatctaaggttatgaaagagtcatgttcactgttcagtggacttgaaa |
5605444 |
T |
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| Q |
124 |
gccaaatattatcgcaaaagttttcaggaaggtccacaagacaatcactaataggaaaggcaaactttttaatattttgtgtatgcaatattgatgatg |
222 |
Q |
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| T |
5605445 |
gccaaatatcattgcaaaagtttacaggaagatcaacaagacaatcactaataggaaagccaaagcctttaagattttgtgtatgcaatatagatgatg |
5605543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 24 - 222
Target Start/End: Complemental strand, 5630025 - 5629827
Alignment:
| Q |
24 |
ttacaaaaggttaagacttttacactcatgaaggcaggactagaaagtaatttatctaaggtgatgaaagggtcctgttcaggattccgttgactaccaa |
123 |
Q |
| |
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|||||||||||||||| ||||||||| | |||||||||||||||||||| |||||||||||| ||||||| ||| |||||| ||| || |||| || |
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| T |
5630025 |
ttacaaaaggttaagatttttacactgacgaaggcaggactagaaagtactttatctaaggttatgaaagagtcatgttcactgttcagtggacttgaaa |
5629926 |
T |
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| Q |
124 |
gccaaatattatcgcaaaagttttcaggaaggtccacaagacaatcactaataggaaaggcaaactttttaatattttgtgtatgcaatattgatgatg |
222 |
Q |
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| T |
5629925 |
gccaaatatcattgcaaaagtttacaggaagatcaacaagacaatcactaataggaaagccaaagcctttaagattttgtgtatgcaatatagatgatg |
5629827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 222
Target Start/End: Original strand, 6308343 - 6308536
Alignment:
| Q |
29 |
aaaggttaagacttttacactcatgaaggcaggactagaaagtaatttatctaaggtgatgaaagggtcctgttcaggattccgttgactaccaagccaa |
128 |
Q |
| |
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||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| | |||| ||||| || |||| |||| || |
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| T |
6308343 |
aaaggttaattcttttacactctggaaggcaggactagaaaataatttatctaaggtgataaaagggtcatcttcacgattctgtggactcgaaagcgaa |
6308442 |
T |
|
| Q |
129 |
atattatcgcaaaagttttcaggaaggtccacaagacaatcactaataggaaaggcaaactttttaatattttgtgtatgcaatattgatgatg |
222 |
Q |
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|||| |||| ||||||||| ||||| ||||||||||||||||| || |||||| ||||| ||||| |||||| ||||||||||||| |||| |
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| T |
6308443 |
atatgatcggcaaagttttctggaagatccacaagacaatcactgattggaaagacaaaccgtttaaggttttgtttatgcaatattgacgatg |
6308536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 41 - 222
Target Start/End: Complemental strand, 13167213 - 13167032
Alignment:
| Q |
41 |
ttttacactcatgaaggcaggactagaaagtaatttatctaaggtgatgaaagggtcctgttcaggattccgttgactaccaagccaaatattatcgcaa |
140 |
Q |
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|||||||||| |||||||||||||| ||||| ||||| ||| || ||||||||||| |||||| | |||||||||| ||||||||| | ||| || |
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| T |
13167213 |
ttttacactctggaaggcaggactaggaagtactttatgtaaagttatgaaagggtcgtgttcacaactccgttgactcataagccaaatttcgtcggaa |
13167114 |
T |
|
| Q |
141 |
aagttttcaggaaggtccacaagacaatcactaataggaaaggcaaactttttaatattttgtgtatgcaatattgatgatg |
222 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||| | ||| || ||| ||||| | |||||||||||||||||| |
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| T |
13167113 |
aagttttcaggaagatccacaagacaatcactgataggaaagactaaccttgtaagattttttttatgcaatattgatgatg |
13167032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 74 - 222
Target Start/End: Complemental strand, 5553436 - 5553288
Alignment:
| Q |
74 |
tttatctaaggtgatgaaagggtcctgttcaggattccgttgactaccaagccaaatattatcgcaaaagttttcaggaaggtccacaagacaatcacta |
173 |
Q |
| |
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|||||||||||||||||||||||| | |||| ||||| || ||| |||| ||| | ||||||||||||||||||||| |||||||||||||||||| |
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| T |
5553436 |
tttatctaaggtgatgaaagggtcattttcacgattcttttcactcacaagataaaaagaatcgcaaaagttttcaggaagatccacaagacaatcacta |
5553337 |
T |
|
| Q |
174 |
ataggaaaggcaaactttttaatattttgtgtatgcaatattgatgatg |
222 |
Q |
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|||| |||| |||| ||||||| |||||||| ||||||||| ||||||| |
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| T |
5553336 |
atagaaaagccaaagtttttaagattttgtgcatgcaatatagatgatg |
5553288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 32635232 - 32635150
Alignment:
| Q |
140 |
aaagttttcaggaaggtccacaagacaatcactaataggaaaggcaaactttttaatattttgtgtatgcaatattgatgatg |
222 |
Q |
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|
||||||||||||||| |||||||||| |||||| |||||| | ||| | || || ||||| |||||||||||||||||||| |
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| T |
32635232 |
aaagttttcaggaagatccacaagactatcactgataggagataaaaaatattcaagattttttgtatgcaatattgatgatg |
32635150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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