View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2327_low_36 (Length: 224)

Name: NF2327_low_36
Description: NF2327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2327_low_36
NF2327_low_36
[»] chr8 (2 HSPs)
chr8 (1-224)||(27228005-27228228)
chr8 (13-224)||(27223826-27224037)
[»] chr1 (9 HSPs)
chr1 (11-223)||(11547079-11547291)
chr1 (11-219)||(48618279-48618487)
chr1 (27-140)||(48639761-48639874)
chr1 (11-224)||(48666992-48667205)
chr1 (56-131)||(48661442-48661517)
chr1 (56-140)||(48585217-48585301)
chr1 (28-135)||(48628731-48628838)
chr1 (29-164)||(48652986-48653121)
chr1 (29-141)||(48656434-48656546)
[»] chr3 (1 HSPs)
chr3 (56-207)||(19665647-19665798)


Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 27228005 - 27228228
Alignment:
Q  1 agtttttgtttttgggttttgaaataaaggaccaatgggtcttattaagacagaattttttgaaatataatttatgaaatcatgttccaattcctcatag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27228005 agtttttgtttttgggttttgaaataaaggaccaatgggtcttattaagacagaatattttgaaatataatttatgaaatcatgttccaattcctcatag 27228104  T
Q  101 gtatccaccaatacacaaaacactttagacaagttcttaatctgttccaataagagtgacccaagaaatggatacttactaaaacaatgaaggaaatctg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27228105 gtatccaccaatacacaaaacactttagacaagttcttaatctgttccaataagagtgacccaagaaatggatacttactaaaacaatgaaggaaatctg 27228204  T
Q  201 gtatttcattgtatttaaggacta 224  Q
    ||||||||||||||||||||||||    
T  27228205 gtatttcattgtatttaaggacta 27228228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 27223826 - 27224037
Alignment:
Q  13 tgggttttgaaataaaggaccaatgggtcttattaagacagaattttttgaaatataatttatgaaatcatgttccaattcctcataggtatccaccaat 112  Q
    |||||||| ||| ||||||||||| |||||||||  ||| |||||||| |||| ||| |  |||||||||||||| | ||||||||| ||||| ||||||    
T  27223826 tgggtttttaaacaaaggaccaataggtcttattttgactgaatttttagaaacatagtcgatgaaatcatgttctagttcctcatacgtatcaaccaat 27223925  T
Q  113 acacaaaacactttagacaagttcttaatctgttccaataagagtgacccaagaaatggatacttactaaaacaatgaaggaaatctggtatttcattgt 212  Q
    ||||||||||||||||||||||||||||| ||||||| || || || |||||||| || | |  |||||||||  ||||  ||||| || || |||||||    
T  27223926 acacaaaacactttagacaagttcttaatttgttccattatgattgtcccaagaattgaaaatgtactaaaaccttgaacaaaatccgggatctcattgt 27224025  T
Q  213 atttaaggacta 224  Q
    | ||||| ||||    
T  27224026 acttaagaacta 27224037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 223
Target Start/End: Original strand, 11547079 - 11547291
Alignment:
Q  11 tttgggttttgaaataaaggaccaatgggtcttattaagacagaattttttgaaatataatttatgaaatcatgttccaattcctcataggtatccacca 110  Q
    ||||| |||| ||| || |||||||| ||||||||   ||  || ||||||| |||||| |  |||||||||||||| | ||| |||||||| || || |    
T  11547079 tttggatttttaaacaatggaccaataggtcttatgtggatggatttttttgtaatatagtcaatgaaatcatgttctagttcttcataggtttctacta 11547178  T
Q  111 atacacaaaacactttagacaagttcttaatctgttccaataagagtgacccaagaaatggatacttactaaaacaatgaaggaaatctggtatttcatt 210  Q
    | ||||||||||||||||| || ||||||| |||||| || | ||||| ||| |||||||||||   |||||||  |||||| |||||||| ||||||||    
T  11547179 aaacacaaaacactttagataaattcttaaactgttctaagatgagtgtccctagaaatggatatggactaaaaggatgaagaaaatctgggatttcatt 11547278  T
Q  211 gtatttaaggact 223  Q
    |||||||||||||    
T  11547279 gtatttaaggact 11547291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 48618487 - 48618279
Alignment:
Q  11 tttgggttttgaaataaaggaccaatgggtcttattaagacagaattttttgaaatataatttatgaaatcatgttccaattcctcataggtatccacca 110  Q
    ||||| || ||||| || ||||||||||||||||  || |  |  |||||||||||||| |  ||||||||||| || | ||| |||||||| || || |    
T  48618487 tttggattgtgaaacaatggaccaatgggtcttacgaaaattgttttttttgaaatatagtcaatgaaatcatgctctagttcttcataggtttctacta 48618388  T
Q  111 atacacaaaacactttagacaagttcttaatctgttccaataagagtgacccaagaaatggatacttactaaaacaatgaaggaaatctggtatttcatt 210  Q
    | |||||||| ||||||||||| ||||||| |||||| || | ||||| ||| ||||||||| | | |||||||  |||||| |||||||| ||||||||    
T  48618387 aaacacaaaatactttagacaaattcttaaactgttctaagatgagtgtccctagaaatggaaattgactaaaaggatgaagaaaatctgggatttcatt 48618288  T
Q  211 gtatttaag 219  Q
    |||||||||    
T  48618287 gtatttaag 48618279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 48639761 - 48639874
Alignment:
Q  27 aaggaccaatgggtcttattaagacagaattttttgaaatataatttatgaaatcatgttccaattcctcataggtatccaccaatacacaaaacacttt 126  Q
    |||||||||| ||||||||   ||  || |||||||||||||||| |||||||||||| || | ||| |||||||||||||| |||||||||||||||||    
T  48639761 aaggaccaataggtcttatggtgattgatttttttgaaatataatctatgaaatcatgctctagttcttcataggtatccactaatacacaaaacacttt 48639860  T
Q  127 agacaagttcttaa 140  Q
    |||||||| |||||    
T  48639861 agacaagtccttaa 48639874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 11 - 224
Target Start/End: Original strand, 48666992 - 48667205
Alignment:
Q  11 tttgggttttgaaataaaggaccaatgggtcttattaagacagaattttttgaaatataatttatgaaatcatgttccaattcctcataggtatccacca 110  Q
    ||||| |||| ||| |||||||||| |||||||||   ||  || ||||  ||||||||||  ||||||||||| || ||||| ||| |||||||||| |    
T  48666992 tttggatttttaaacaaaggaccaacgggtcttatggcgattgatttttccgaaatataatcgatgaaatcatgctctaattcttcaaaggtatccacta 48667091  T
Q  111 atacacaaaacactttagacaagttcttaatctgttccaataagagtgacccaagaaatggatacttactaaaacaatgaaggaaatctggtatttcatt 210  Q
    ||||||||||||||||||||| || ||| |||||| ||     ||||| ||| |||| ||||||  ||| ||||  ||| |  |||||||| ||||||||    
T  48667092 atacacaaaacactttagacatgtcctttatctgtgccgtggtgagtgtccctagaattggatatctacaaaaaggatgtataaaatctgggatttcatt 48667191  T
Q  211 gtatttaaggacta 224  Q
    ||||||||| ||||    
T  48667192 gtatttaagaacta 48667205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 48661442 - 48661517
Alignment:
Q  56 ttttttgaaatataatttatgaaatcatgttccaattcctcataggtatccaccaatacacaaaacactttagaca 131  Q
    ||||||||||||||||  ||||||||||| || ||||| ||| |||||||||| ||||||||||||||||||||||    
T  48661442 ttttttgaaatataatcgatgaaatcatgctctaattcttcaaaggtatccactaatacacaaaacactttagaca 48661517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 56 - 140
Target Start/End: Original strand, 48585217 - 48585301
Alignment:
Q  56 ttttttgaaatataatttatgaaatcatgttccaattcctcataggtatccaccaatacacaaaacactttagacaagttcttaa 140  Q
    ||||| |||||||||| |||||| ||||| || | ||| |||||||||||||| |||||||||||||||||||| |||| |||||    
T  48585217 tttttcgaaatataatctatgaattcatgctctagttcttcataggtatccactaatacacaaaacactttagataagtccttaa 48585301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 48628731 - 48628838
Alignment:
Q  28 aggaccaatgggtcttattaagacagaattttttgaaatataatttatgaaatcatgttccaattcctcataggtatccaccaatacacaaaacacttta 127  Q
    ||||||||||||||| || | ||| || ||||| |||| |||||  ||||||||||| || | ||| |||||||||||| | ||||||||||| | |||     
T  48628731 aggaccaatgggtctaatgaggactgattttttggaaagataatcgatgaaatcatgctctagttcttcataggtatccgctaatacacaaaatattttg 48628830  T
Q  128 gacaagtt 135  Q
    ||||||||    
T  48628831 gacaagtt 48628838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 164
Target Start/End: Original strand, 48652986 - 48653121
Alignment:
Q  29 ggaccaatgggtcttattaagacagaattttttgaaatataatttatgaaatcatgttccaattcctcataggtatccaccaatacacaaaacactttag 128  Q
    ||||||||||||||||| | ||  || || ||||||||||| |  ||||||||||| || | ||| |||||||| || || || |||||||| |||||||    
T  48652986 ggaccaatgggtcttatgaggattgatttgtttgaaatatagtcaatgaaatcatgctctagttcttcataggtttctactaaaacacaaaatactttag 48653085  T
Q  129 acaagttcttaatctgttccaataagagtgacccaa 164  Q
    | || |||||||| ||||| || | ||||| |||||    
T  48653086 ataaattcttaatttgttctaagacgagtgtcccaa 48653121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 48656434 - 48656546
Alignment:
Q  29 ggaccaatgggtcttattaagacagaattttttgaaatataatttatgaaatcatgttccaattcctcataggtatccaccaatacacaaaacactttag 128  Q
    |||||||| |||||||| | ||  || ||||  ||||||||||  || |||||| | || | ||| |||||||||||||| |||||||| ||  ||||||    
T  48656434 ggaccaattggtcttatgatgattgacttttccgaaatataatcgataaaatcaggctctagttcttcataggtatccacaaatacacacaatgctttag 48656533  T
Q  129 acaagttcttaat 141  Q
    |||| ||||||||    
T  48656534 acaaattcttaat 48656546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 56 - 207
Target Start/End: Complemental strand, 19665798 - 19665647
Alignment:
Q  56 ttttttgaaatataatttatgaaatcatgttccaattcctcataggtatccaccaatacacaaaacactttagacaagttcttaatctgttccaataaga 155  Q
    ||||| |||||||| |  ||| ||||||| || | ||| |||||  |||||||||||||||||||||||||||| || ||||||| |||||| || | ||    
T  19665798 tttttcgaaatatagtcgatgtaatcatgctctagttcatcataactatccaccaatacacaaaacactttagataaattcttaaactgttctaaaatga 19665699  T
Q  156 gtgacccaagaaatggatacttactaaaacaatgaaggaaatctggtatttc 207  Q
    ||| ||| ||||||| ||| |||||||||  ||| || ||||| ||||||||    
T  19665698 gtgtccctagaaatgaatatttactaaaaggatgtagaaaatccggtatttc 19665647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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