View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2327_low_37 (Length: 215)
Name: NF2327_low_37
Description: NF2327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2327_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 13714701 - 13714503
Alignment:
| Q |
1 |
gttgatgtgagttaaaatattgataggacatgataagttttggtggagtgctataatctaaccatgnnnnnnntaggtccattatggaccaactttttta |
100 |
Q |
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| T |
13714701 |
gttgatgtgggttaaaatattgattggacatgataagttttggtggagtgctctaatctaaccataaaaaaaataggtctattatggaccaactttttta |
13714602 |
T |
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| Q |
101 |
caggtccaatttataagaaaccatctttttgtctttcctctactttagttttatgtcttcttatgtactagttcatccttctatactagacgttctttg |
199 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
13714601 |
caggtccaatttatacggaaccatctttttgtctttcctctactttagttttatgtcttcttaagtactagttcatccttctatactagacgtcctttg |
13714503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 4849197 - 4849311
Alignment:
| Q |
1 |
gttgatgtgagttaaaatattgataggacatgataagttttggtggagtgctataatctaaccatgnnnnnnntaggtccattatggaccaactttttta |
100 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||| |||| |||||||||| ||||||| ||| ||||||||||||||||||||||| |
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| T |
4849197 |
gttgatgtgggttaaaatattgataggacatgataaattttgatggaatgctataatcaaaccatgaaaaaaatagatccattatggaccaactttttta |
4849296 |
T |
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| Q |
101 |
caggtccaatttata |
115 |
Q |
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| T |
4849297 |
caggtccaatttata |
4849311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 45907471 - 45907357
Alignment:
| Q |
1 |
gttgatgtgagttaaaatattgataggacatgataagttttggtggagtgctataatctaaccatgnnnnnnntaggtccattatggaccaactttttta |
100 |
Q |
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| T |
45907471 |
gttgatgtgggttaaaatatttataggacatgataaattttggtggagtgctataatctaaccatgaaaaaaataggtctattatggaccaactttttta |
45907372 |
T |
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| Q |
101 |
caggtccaatttata |
115 |
Q |
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||||||||||||||| |
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| T |
45907371 |
caggtccaatttata |
45907357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 22918216 - 22918318
Alignment:
| Q |
6 |
tgtgagttaaaatattgataggacatgataagttttggtggagtgctataatctaaccatgnnnnnnntaggtccattatggaccaacttttttacaggt |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22918216 |
tgtgggttaaaatattgataggacatgataagttttggtggagtgctaaaatctaaccatgaaaaaaataggtccattatggaccaacttttttacaggt |
22918315 |
T |
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| Q |
106 |
cca |
108 |
Q |
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||| |
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| T |
22918316 |
cca |
22918318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 4783848 - 4783753
Alignment:
| Q |
20 |
ttgataggacatgataagttttggtggagtgctataatctaaccatgnnnnnnntaggtccattatggaccaacttttttacaggtccaatttata |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||| ||||||||||| |
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| T |
4783848 |
ttgataggacatgataagttttggtggagtgctataatctaaccatgaaaaaaataggtctattatgaaccaacttttttacagatccaatttata |
4783753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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