View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2329_high_13 (Length: 403)
Name: NF2329_high_13
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2329_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 385
Target Start/End: Complemental strand, 16383043 - 16382668
Alignment:
| Q |
11 |
agattattctaaggaaagaatgagaagaacgtggtaaccccacaagatggccgaactgaagaagatgatcctaagccctttttcccaaccatatgataca |
110 |
Q |
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| T |
16383043 |
agattatcctaaggaaagaatgagaagaacgtggtaaccccacaagatggccgaactgaagaagatgatcctaagccctttttcccaaccatatgataca |
16382944 |
T |
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| Q |
111 |
atttgtaaatcaaaatttcatnnnnnnnncatcgttcataattttcaaacgttgacccattnnnnnnncggaaaagacactggtattaataaggtatagt |
210 |
Q |
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| T |
16382943 |
atttgtaaatcaaaatttcataaaaaaaacatcgttcataattttcaaacattgactcattaaaaaaacggaaaagacactggcattaataaggtatagt |
16382844 |
T |
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| Q |
211 |
tgnnnnnnnn-gtaataattgcatctaaaaatttatagatagtcttaaattttaaggacaannnnnnnaaaaaacagtcttagaattaagcacagagaaa |
309 |
Q |
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| T |
16382843 |
tgaaaaaaaaagtaataattgcacctaaaaatttatagatagtcttaaattttaaggacaatttttttaaaaaacagtcttagaattaagcacagagaaa |
16382744 |
T |
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| Q |
310 |
atggaggaagtactactgaaagagtgcttactgatttgtatggaaggtccccagggtgcattgaacaacaacaatt |
385 |
Q |
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| T |
16382743 |
atggaggaagtactactgaaagagtgcttactgattagtatggaaggtccccacggtgcattgaacaacaacaatt |
16382668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 15109484 - 15109425
Alignment:
| Q |
21 |
aaggaaagaatgagaagaacgtggtaaccccacaagatggccgaactgaagaagatgatc |
80 |
Q |
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| T |
15109484 |
aaggaatgaatgagaagaacttggtaatccagcaagatgcccgaactgaaggagatgatc |
15109425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 29022608 - 29022534
Alignment:
| Q |
13 |
attattctaaggaaagaatgagaagaacgtggtaaccccacaagatggccgaactgaagaagatgatcctaagcc |
87 |
Q |
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| T |
29022608 |
attatcctaaggaaataatgagatgaacgcggtaaccctgcaagatggccgaactgaagaagatgattctaagcc |
29022534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 9325222 - 9325167
Alignment:
| Q |
22 |
aggaaagaatgagaagaacgtggtaaccccacaagatggccgaactgaagaagatg |
77 |
Q |
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| T |
9325222 |
aggaaagaatgagaagaacgcggtaaccccgcaagatggctgaactgaagaagatg |
9325167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 10456787 - 10456747
Alignment:
| Q |
221 |
gtaataattgcatctaaaaatttatagatagtcttaaattt |
261 |
Q |
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| T |
10456787 |
gtaataaatgcatctaaaaatttataaatagtcttatattt |
10456747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 5553439 - 5553385
Alignment:
| Q |
34 |
gaagaacgtggtaaccccacaagatggccgaactgaagaagatgatcctaagccc |
88 |
Q |
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| T |
5553439 |
gaagaacgcggtaaccccgcaaggtgcccgaactgatgaagatgatcctgagccc |
5553385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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