View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2329_high_16 (Length: 388)
Name: NF2329_high_16
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2329_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 21 - 384
Target Start/End: Complemental strand, 38390002 - 38389629
Alignment:
| Q |
21 |
gctagtaagaaaaatctaaaaccagccagctgccttggcaaccaataaatacggaatcgatcaaaagatgcgtatcaagagaatacatat-------gcg |
113 |
Q |
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| T |
38390002 |
gctagtaagaaaaatctaaaaccacccagctgccttggcaaccaataaatatggaatcgatcaaaagatacgtatcaagagaatacatactcatgaagcg |
38389903 |
T |
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| Q |
114 |
caattcattttactatatcttgtaactttgtcatgtaggtctgaacaatgtggtttttcaatttaagtaactactaataattcatgcaaatccattactc |
213 |
Q |
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| T |
38389902 |
caattcattttactatatcttctaactttgtcatgtaggtctgaacaatgtggtttttcaatttaagtaactactaataattcataaaaatccattgctc |
38389803 |
T |
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| Q |
214 |
atgtggttttactatatcttcaaacttatagatttttctaactaggtagcaaattcattagcaaagcttattccaacatcagtaagctaaaatgcctctt |
313 |
Q |
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| T |
38389802 |
atgtggttttactatatcttctaacttttagatttttctaactaggtagcaaattcattagcaaagcttattccaacatcagtaagctaaaatgcctc-t |
38389704 |
T |
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| Q |
314 |
gcaagctcattaggtgtcacatacctataatatttttcattttctgcccaa----aattgctcctgatctttcat |
384 |
Q |
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| T |
38389703 |
gcaaactctttaggtgtcacatacctataagatttttcattttccgcccaaaattaattgctcctgatctttcat |
38389629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 114 - 218
Target Start/End: Original strand, 38391171 - 38391275
Alignment:
| Q |
114 |
caattcattttactatatcttgtaactttgtcatgtaggtctgaacaatgtggtttttcaatttaagtaactactaataattcatgcaaatccattactc |
213 |
Q |
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||||||||||||||||||||| ||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38391171 |
caattcattttactatatcttcaaactttgtcatgtaggtttgaataatgtagtttttcaatttaagtaactactaataattcatacaaatccattactc |
38391270 |
T |
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| Q |
214 |
atgtg |
218 |
Q |
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||||| |
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| T |
38391271 |
atgtg |
38391275 |
T |
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