View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2329_high_2 (Length: 568)
Name: NF2329_high_2
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2329_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 306 - 562
Target Start/End: Complemental strand, 3177455 - 3177199
Alignment:
| Q |
306 |
tttgcaagtgaagcaaaatacatacctgtcatgtctaaaattatgcatttcaatgcacttccgttgagtgctaccacgcgttcttcctcttctcgaaccc |
405 |
Q |
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| T |
3177455 |
tttgcaagtgaagcaaaatacatacctgtcatgtctaaaattatgcacttcaatgcacttccgttgagtgctaccacgcgttcttcctcttctcgaaccc |
3177356 |
T |
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| Q |
406 |
atctcagtatcctaaagaaagagaaacactcnnnnnnntgccttgaactaatctttgaaatgtacaaaacttgacaagaatacatattgccttataaatg |
505 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3177355 |
atctcagtatcctaaagaaagagaaacactcaaaaaaatgccttgaactaatctttgaaatgtacaaaacttgacaagaatacatattgccttataaatg |
3177256 |
T |
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| Q |
506 |
tggaccagatacatatacttttttgtttatacttaagtcgagagggagtataatcta |
562 |
Q |
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| T |
3177255 |
tggaccagatacatatacttttttgtttatacttaagtcgagagggagtattatcta |
3177199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 3177743 - 3177520
Alignment:
| Q |
18 |
gtttttagcttatttccataagttctgcttatgttacaagtacttaattaagctatttatccagattatatcttcttatacgtgttacaatgagtatata |
117 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3177743 |
gtttttagcttatttccataagttatgcttatgttacaagtacttaattaagctatttatccagattatatctgcttatacgtgttacaatgagtatata |
3177644 |
T |
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| Q |
118 |
ctagtgttgcaacttgcgcgatgcacgagcaggtatatatttacctgaagtgatttttgttccagtctccttctaagttcgcataatgtatcgataccac |
217 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3177643 |
ctagtgttgcaacttgctcgatgcacgagcaggtatatatttacctgaagtgatttttgttccagtctccttctaagttcgcataatgtatcgataccac |
3177544 |
T |
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| Q |
218 |
ttgtgtctatgccagtcacggctg |
241 |
Q |
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| T |
3177543 |
ttgtgtctatgccagtcacggctg |
3177520 |
T |
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