View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2329_high_21 (Length: 333)
Name: NF2329_high_21
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2329_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 40207961 - 40207664
Alignment:
| Q |
18 |
acaacatccatgtaagtgtagtttctcttgccattgataggatcatcattacgataacattcacaaagaagaatggcagtgtagtaagtaacccaagcaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40207961 |
acaacatccatgtaagtgtagtttctcttgccattgataggatcatcattacgataacattcacaaagaagaatggcagtgtagtaagtaacccaagcaa |
40207862 |
T |
|
| Q |
118 |
agagaatcataacaataggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacatgtgc |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40207861 |
agagaatcatgacaataggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacatgtgc |
40207762 |
T |
|
| Q |
218 |
acttgcagtccaaacagttcctgtgtttttcaagaaacatattagaatttgggtcgagtatgcaaacaaaataaaagacaatacttaattaccggttc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40207761 |
acttgcagtccaaacagttcctgtgtttttcaagaaacatattagaatttgggtcgagtatgcaaacaaaataaaagtcaatacttaattaccggttc |
40207664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 22 - 276
Target Start/End: Complemental strand, 40199638 - 40199384
Alignment:
| Q |
22 |
catccatgtaagtgtagtttctcttgccattgataggatcatcattacgataacattcacaaagaagaatggcagtgtagtaagtaacccaagcaaagag |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||| |
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| T |
40199638 |
catccatgtaagtgtagtttctcttgccattgataggatcatcattacgataacattcgcatagaagaatggaagtgtagtaagtaacccaagcaaagag |
40199539 |
T |
|
| Q |
122 |
aatcataacaataggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacatgtgcactt |
221 |
Q |
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|||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40199538 |
aatcatgacaataggaccagcaatccatccaagttgagcaatagcccaagatagagacagcactccagaccctaccacagctgttattacatgtgcactt |
40199439 |
T |
|
| Q |
222 |
gcagtccaaacagttcctgtgtttttcaagaaacatattagaatttgggtcgagt |
276 |
Q |
| |
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||||||||| |||||||||||||||||| |||| ||||| |||||||||||||| |
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| T |
40199438 |
gcagtccaagcagttcctgtgtttttcataaaacctattaaaatttgggtcgagt |
40199384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 40203805 - 40203555
Alignment:
| Q |
18 |
acaacatccatgtaagtgtagtttctcttgccattgataggatcatcattacgataacattcacaaagaagaatggcagtgtagtaagtaacccaagcaa |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||| || |||||||||||||||| |||||||||| || || |||||||||||||||| |
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| T |
40203805 |
acaacatccatgtaagtatagtttctcttgccactgataggatcaccagtacgataacattcacagagaagaatggaggtataataagtaacccaagcaa |
40203706 |
T |
|
| Q |
118 |
agagaatcataacaataggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacatgtgc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
40203705 |
agagaatcataacaataggaccagcaatccatccaagttgagcaatagcccaagctagagacagcactccagaccctatcacagctgttattacatgtgc |
40203606 |
T |
|
| Q |
218 |
acttgcagtccaaacagttcctgtgtttttcaagaaacatattagaatttg |
268 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40203605 |
acttgcagtccaagcagttcctgtgtttttcaagaaacatattagaatttg |
40203555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 28 - 229
Target Start/End: Original strand, 10299650 - 10299851
Alignment:
| Q |
28 |
tgtaagtgtagtttctcttgccattgataggatcatcattacgataacattcacaaagaagaatggcagtgtagtaagtaacccaagcaaagagaatcat |
127 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| | |||||||||| || |||||||| ||| |||||||||||||| | | || |||| ||| |
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| T |
10299650 |
tgtaagtgtagtttcttttgccattgagttgatcaccggtacgataacaaacagaaagaagagtggaggtgtagtaagtaacaaacgagaaaagaagcat |
10299749 |
T |
|
| Q |
128 |
aacaataggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacatgtgcacttgcagtc |
227 |
Q |
| |
|
| || |||||||||||||| ||||| ||||||||||| || | |||||| |||||||| || | ||||||||| |||| ||||||||||| ||| |
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| T |
10299750 |
cattgatggtccagcaatccatccaagttgtgcaatagcccatgccaaagacagcactccagaaccaatcacagctgtgattatgtgtgcacttgctgtc |
10299849 |
T |
|
| Q |
228 |
ca |
229 |
Q |
| |
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|| |
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|
| T |
10299850 |
ca |
10299851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 39429174 - 39429280
Alignment:
| Q |
134 |
aggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacatgtgcacttgcagtccaaaca |
233 |
Q |
| |
|
||||||||||||||| || || |||||||| |||||||||| ||||| || || || |||| ||||||||||| | |||| ||||| ||||||||| |
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| T |
39429174 |
aggaccagcaatccaacctagctgagcaatggcccaagctaaagacaacacccctgatcctataacagctgttataatgtgtgagcttgcggtccaaaca |
39429273 |
T |
|
| Q |
234 |
gttcctg |
240 |
Q |
| |
|
|||||| |
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|
| T |
39429274 |
cttcctg |
39429280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 6249434 - 6249330
Alignment:
| Q |
134 |
aggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacatgtgcacttgcagtccaaaca |
233 |
Q |
| |
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||||||||||| ||| || || ||||| || |||||||||| ||||| || || || |||| |||||||||||||| |||| | |||||||| ||||| |
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| T |
6249434 |
aggaccagcaacccaacctagctgagctatggcccaagctaaagacaacacccctgatcctatcacagctgttattatgtgtgaaattgcagtcaaaaca |
6249335 |
T |
|
| Q |
234 |
gttcc |
238 |
Q |
| |
|
|||| |
|
|
| T |
6249334 |
cttcc |
6249330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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