View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2329_high_24 (Length: 331)
Name: NF2329_high_24
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2329_high_24 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] scaffold0617 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 3 - 331
Target Start/End: Original strand, 654898 - 655226
Alignment:
| Q |
3 |
cgtgtatgccaccaattctgtgatgctttctcctttgtaaagaattcccatttcaattgtgccattgatctatcttaatatcctctttgctgcacaccaa |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
654898 |
cgtgtatgccaccaattctgtgatgctttctcctttttaaagaattctcatttcaattgtgccattgatgtatcttaatatcctctttgctgcacaccaa |
654997 |
T |
|
| Q |
103 |
tgttcctcagttggagatgacatatatctgctaatcaaactcaccccaaacataatgtctggtcttgttgctgtcaagtacatcaagcttccaacaactt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
654998 |
tgttcctcagttggagatgacatatatctgctaatcaaactcaccccaaacataatgtctggtcttgttgctgtcaagtacatcaagcttccaacaactt |
655097 |
T |
|
| Q |
203 |
gcttgaacatggttgaatcgatcttggttcccttctcatccttgaaaagccttgttcctggtacaataggatttccaactggtttgctatcagacatgcc |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
655098 |
gcttgaacatggttgaatcgatcttggttcccttctcatccttggaaagccttgtgcctggtacaataggatttccaactggtttgctatcagacatgcc |
655197 |
T |
|
| Q |
303 |
aaaccttgccagcacttctctcgcatact |
331 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
655198 |
aaaccttgccagcacttctctcgcatact |
655226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 211
Target Start/End: Complemental strand, 14247327 - 14247246
Alignment:
| Q |
130 |
ctgctaatcaaactcaccccaaacataatgtctggtcttgttgctgtcaagtacatcaagcttccaacaacttgcttgaaca |
211 |
Q |
| |
|
||||| || ||||| || |||||||| ||||| ||||| ||| | ||||||||||| | ||||||||| ||||||||||||| |
|
|
| T |
14247327 |
ctgcttattaaactaacaccaaacatcatgtcaggtctagttacagtcaagtacatgaggcttccaaccacttgcttgaaca |
14247246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0617
Description:
Target: scaffold0617; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 655 - 736
Alignment:
| Q |
130 |
ctgctaatcaaactcaccccaaacataatgtctggtcttgttgctgtcaagtacatcaagcttccaacaacttgcttgaaca |
211 |
Q |
| |
|
||||| || ||||| || |||||||| ||||| ||||| ||| | ||||||||||| | ||||||||| ||||||||||||| |
|
|
| T |
655 |
ctgcttattaaactaacaccaaacatcatgtcaggtctagttacagtcaagtacatgaggcttccaaccacttgcttgaaca |
736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 6099 - 6180
Alignment:
| Q |
130 |
ctgctaatcaaactcaccccaaacataatgtctggtcttgttgctgtcaagtacatcaagcttccaacaacttgcttgaaca |
211 |
Q |
| |
|
||||| || ||||| || |||||||| ||||| ||||| ||| | ||||||||||| | ||||||||| ||||||||||||| |
|
|
| T |
6099 |
ctgcttattaaactaacaccaaacatcatgtcaggtctagttacagtcaagtacatgaggcttccaaccacttgcttgaaca |
6180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University