View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2329_high_27 (Length: 320)

Name: NF2329_high_27
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2329_high_27
NF2329_high_27
[»] chr8 (14 HSPs)
chr8 (1-305)||(29428866-29429171)
chr8 (87-288)||(25569325-25569527)
chr8 (128-288)||(25340459-25340620)
chr8 (118-222)||(25799768-25799872)
chr8 (83-222)||(25646488-25646627)
chr8 (138-225)||(25694863-25694950)
chr8 (128-222)||(25489691-25489785)
chr8 (118-204)||(25322171-25322257)
chr8 (138-222)||(25604140-25604223)
chr8 (159-221)||(25474766-25474828)
chr8 (83-191)||(24913522-24913630)
chr8 (155-222)||(22901643-22901710)
chr8 (99-192)||(25685145-25685236)
chr8 (113-204)||(25452504-25452595)
[»] scaffold0070 (1 HSPs)
scaffold0070 (83-222)||(17534-17673)


Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 29428866 - 29429171
Alignment:
Q  1 ttcattgtttattcaaatatgtattgcttatgtactagctatcaaaaccaatcatatcttcaatacattctttttaacgcaaaagaaaatataacaagaa 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29428866 ttcattgtttattcaaatatgtattgcttatgtactaactatcaaaaccaatcatatcttcaatacattctttttaacgcaaaagaaaatataacaagaa 29428965  T
Q  101 aataatgtactacaatttcatgcaacaatgaagaaatttgaaagaacaaactaaaaggagcaagacatc-aatccaaaagcaatatcgaaaacatcccac 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||     
T  29428966 aataatgtactacaatttcatgcaacaatgaagaaatttgaaagaacaaactaaaaggagcaagacatcaaatccaaaagcaatattgaaaacatcccat 29429065  T
Q  200 acaaacattacaaaaggaaaaaattaacacctaaacatacattctaaagagttaaaactctacttgtacgaatgaaaataactggaccccatttgcatca 299  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29429066 acaaacattacaaaaggaaaaaataaacacctaaacatacattctaaagagttaaaactctacttgtacgaatgaaaataactggaccccatttgcatca 29429165  T
Q  300 agaaac 305  Q
    ||||||    
T  29429166 agaaac 29429171  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 87 - 288
Target Start/End: Original strand, 25569325 - 25569527
Alignment:
Q  87 aaatataacaagaaaataatgtactacaatttcatgcaacaatgaagaaatttgaaagaacaaactaaaaggagcaagacatcaatccaaaagcaatatc 186  Q
    |||||||  ||||||||  |||||| |||| |||  |||| ||||||||| |||||||||||||| | ||| |||||||||| ||||||||| | ||||     
T  25569325 aaatatattaagaaaatggtgtacttcaatctcaaacaacgatgaagaaaattgaaagaacaaaccagaagaagcaagacataaatccaaaaaccatatt 25569424  T
Q  187 gaaaacatcccacacaaacattacaaaaggaaaa-aattaacacctaaacatacattctaaagagttaaaactctacttgtacgaatgaaaataactgga 285  Q
    |||||||||||||||||||||||||||||||||| ||| | ||| |||| |||||||| || || |||||||||  ||| ||| ||||||||||||| ||    
T  25569425 gaaaacatcccacacaaacattacaaaaggaaaagaataaccacttaaaaatacattccaacgaattaaaactcctcttatacaaatgaaaataactaga 25569524  T
Q  286 ccc 288  Q
    |||    
T  25569525 ccc 25569527  T

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Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 128 - 288
Target Start/End: Original strand, 25340459 - 25340620
Alignment:
Q  128 atgaagaaatttgaaagaacaaactaaaaggagcaagacatcaatccaaaagcaatatcgaaaacatcccacacaaacattacaaaaggaaaa-aattaa 226  Q
    ||||||||| ||||||  |||||| | ||| |||||||||| ||||||||| | |||| |||||||||||||||||||||||||||||||||| ||| |     
T  25340459 atgaagaaaattgaaaagacaaaccagaagaagcaagacataaatccaaaaaccatattgaaaacatcccacacaaacattacaaaaggaaaagaataac 25340558  T
Q  227 cacctaaacatacattctaaagagttaaaactctacttgtacgaatgaaaataactggaccc 288  Q
    ||| |||| |||||||| || || |||||||||  ||| ||| ||||||||||||| |||||    
T  25340559 cacttaaaaatacattccaacgaattaaaactcctcttatacaaatgaaaataactagaccc 25340620  T

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Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 25799768 - 25799872
Alignment:
Q  118 tcatgcaacaatgaagaaatttgaaagaacaaactaaaaggagcaagacatcaatccaaaagcaatatcgaaaacatcccacacaaacattacaaaagga 217  Q
    |||| |||||||||||| | ||||||| |||||| | ||| |||||||||||||||||||| |||||| |||||||||  ||||||||||||||||||||    
T  25799768 tcatacaacaatgaagacagttgaaaggacaaacaagaagtagcaagacatcaatccaaaaacaatattgaaaacatcaaacacaaacattacaaaagga 25799867  T
Q  218 aaaaa 222  Q
    |||||    
T  25799868 aaaaa 25799872  T

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Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 222
Target Start/End: Original strand, 25646488 - 25646627
Alignment:
Q  83 aagaaaatataacaagaaaataatgtactacaatttcatgcaacaatgaagaaatttgaaagaacaaactaaaaggagcaagacatcaatccaaaagcaa 182  Q
    |||||||||||  |||||||||||||||| | || |||| |||||| |||||   ||||||| |||||| | ||| |||||||||||||||||||| |||    
T  25646488 aagaaaatatattaagaaaataatgtacttccatctcatacaacaacgaagacggttgaaaggacaaaccagaagtagcaagacatcaatccaaaaacaa 25646587  T
Q  183 tatcgaaaacatcccacacaaacattacaaaaggaaaaaa 222  Q
    ||| |||||||||  ||||||  |||||||||||||||||    
T  25646588 tattgaaaacatcaaacacaataattacaaaaggaaaaaa 25646627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 25694863 - 25694950
Alignment:
Q  138 ttgaaagaacaaactaaaaggagcaagacatcaatccaaaagcaatatcgaaaacatcccacacaaacattacaaaaggaaaaaatta 225  Q
    ||||||| ||| || | ||| |||||||||||||||||||| |||||| |||||||||  ||||||||||||||||||||||||||||    
T  25694863 ttgaaaggacagaccagaagtagcaagacatcaatccaaaaacaatattgaaaacatcaaacacaaacattacaaaaggaaaaaatta 25694950  T

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Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 25489691 - 25489785
Alignment:
Q  128 atgaagaaatttgaaagaacaaactaaaaggagcaagacatcaatccaaaagcaatatcgaaaacatcccacacaaacattacaaaaggaaaaaa 222  Q
    ||||||| | ||||||| |||||| | ||| |||||||||||||||||||| |||||| |||||||||  |||||||| ||||||||||||||||    
T  25489691 atgaagacagttgaaaggacaaacaagaagtagcaagacatcaatccaaaaacaatattgaaaacatcaaacacaaaccttacaaaaggaaaaaa 25489785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 25322171 - 25322257
Alignment:
Q  118 tcatgcaacaatgaagaaatttgaaagaacaaactaaaaggagcaagacatcaatccaaaagcaatatcgaaaacatcccacacaaa 204  Q
    |||| |||||||||||| | ||||||| |||||| | ||| |||||||||||||||||||| |||||| |||||||||  |||||||    
T  25322171 tcatacaacaatgaagacagttgaaaggacaaaccagaagtagcaagacatcaatccaaaaacaatattgaaaacatcaaacacaaa 25322257  T

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Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 25604140 - 25604223
Alignment:
Q  138 ttgaaagaacaaactaaaaggagcaagacatcaatccaaaagcaatatcgaaaacatcccacacaaacattacaaaaggaaaaaa 222  Q
    ||||||| || ||| | ||| |||||||||||||| ||||| |||||| |||||||||  |||||||||||||||||||||||||    
T  25604140 ttgaaaggaccaaccagaagtagcaagacatcaatacaaaa-caatattgaaaacatcaaacacaaacattacaaaaggaaaaaa 25604223  T

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Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 25474766 - 25474828
Alignment:
Q  159 agcaagacatcaatccaaaagcaatatcgaaaacatcccacacaaacattacaaaaggaaaaa 221  Q
    |||||||||| |||||||||   |||| |||||||||||||||||||||||||||| ||||||    
T  25474766 agcaagacataaatccaaaaagcatattgaaaacatcccacacaaacattacaaaaagaaaaa 25474828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 191
Target Start/End: Complemental strand, 24913630 - 24913522
Alignment:
Q  83 aagaaaatataacaagaaaataatgtactacaatttcatgcaacaatgaagaaatttgaaagaacaaactaaaaggagcaagacatcaatccaaaagcaa 182  Q
    |||||||||||  |||||||||||||||| || | |||| ||||||  ||||   ||||||| ||||||   ||| |||||||||||||||||||| |||    
T  24913630 aagaaaatatattaagaaaataatgtacttcattctcatacaacaacaaagactgttgaaaggacaaacaggaagtagcaagacatcaatccaaaaacaa 24913531  T
Q  183 tatcgaaaa 191  Q
    ||| |||||    
T  24913530 tattgaaaa 24913522  T

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Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 22901710 - 22901643
Alignment:
Q  155 aaggagcaagacatcaatccaaaagcaatatcgaaaacatcccacacaaacattacaaaaggaaaaaa 222  Q
    |||||||||| ||||||||||||| |||||| ||||||| || | | |||||||||||||| ||||||    
T  22901710 aaggagcaaggcatcaatccaaaatcaatatagaaaacaacctataaaaacattacaaaagaaaaaaa 22901643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 192
Target Start/End: Original strand, 25685145 - 25685236
Alignment:
Q  99 aaaataatgtactacaatttcatgcaacaatgaagaaatttgaaagaacaaactaaaaggagcaagacatcaatccaaaagcaatatcgaaaac 192  Q
    |||| |||||||| |||| |||| ||| ||  |||||| |||||||||||||| |||| ||||||| ||||||||||||| |||||| ||||||    
T  25685145 aaaaaaatgtacttcaatctcatacaaaaacaaagaaaattgaaagaacaaac-aaaaagagcaagccatcaatccaaaa-caatattgaaaac 25685236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 204
Target Start/End: Original strand, 25452504 - 25452595
Alignment:
Q  113 caatttcatgcaacaatgaagaaatttgaaagaacaaactaaaaggagcaagacatcaatccaaaagcaatatcgaaaacatcccacacaaa 204  Q
    |||| |||| |||| ||||||||| ||||| | |||||| | ||| |||||||||| |||| | || | |||| ||||||||||||||||||    
T  25452504 caatctcatacaacgatgaagaaaattgaatggacaaaccagaagaagcaagacattaatcaagaaaccatattgaaaacatcccacacaaa 25452595  T

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Target: scaffold0070 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 222
Target Start/End: Complemental strand, 17673 - 17534
Alignment:
Q  83 aagaaaatataacaagaaaataatgtactacaatttcatgcaacaatgaagaaatttgaaagaacaaactaaaaggagcaagacatcaatccaaaagcaa 182  Q
    |||||||||||  |||||||||||||||| || | |||| |||||| ||||| | ||||||| ||||||   ||| |||||||||||||||||||| |||    
T  17673 aagaaaatatattaagaaaataatgtacttcattctcatacaacaacgaagacagttgaaaggacaaacaggaagtagcaagacatcaatccaaaaacaa 17574  T
Q  183 tatcgaaaacatcccacacaaacattacaaaaggaaaaaa 222  Q
    ||| ||| |||||  ||||||| |||||||||||||||||    
T  17573 tattgaatacatcaaacacaaaaattacaaaaggaaaaaa 17534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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