View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2329_high_30 (Length: 305)
Name: NF2329_high_30
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2329_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 35212760 - 35213037
Alignment:
| Q |
18 |
cacgattgatatcttcttgatcaccttcagcaacatgagcaatcacttccccagttcttgggtcataagcaggaaaagtttttcctattcaccaataata |
117 |
Q |
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| T |
35212760 |
cacgattgatatcttcttgatcaccttcagcaacatgagcaatcacttccccagttcttgggtcataagcaggaaaagtttttcctattcaccaataata |
35212859 |
T |
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| Q |
118 |
aattgtcacaactacactccactatgtataacattagaggtattagtatactattaaatcacatgaacctgatgcagcatccacaaatttcccattaatg |
217 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35212860 |
aattgtcacaactacactccactatgcataacattagaggtattagtatactattaaatcacatgaacctgatgcagcatccataaatttcccattaatg |
35212959 |
T |
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| Q |
218 |
agattctttgtgtatcttatttccacagatggtgtgattaattcatcaacttcagcagcagtgctcaacttgcctatg |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35212960 |
agattctttgtgtatcttatttccacagatggtgtgattaattcatcaacttcagcagcagtgctcaacttgcttatg |
35213037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Complemental strand, 39294041 - 39294009
Alignment:
| Q |
37 |
atcaccttcagcaacatgagcaatcacttcccc |
69 |
Q |
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| T |
39294041 |
atcaccttcagcaacgtgagcaatcacttcccc |
39294009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 44000240 - 44000272
Alignment:
| Q |
37 |
atcaccttcagcaacatgagcaatcacttcccc |
69 |
Q |
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| T |
44000240 |
atcaccttcagcaacatgagcaatcacttcccc |
44000272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 8357685 - 8357717
Alignment:
| Q |
37 |
atcaccttcagcaacatgagcaatcacttcccc |
69 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
8357685 |
atcaccttcagcaacgtgagcaatcacttcccc |
8357717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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