View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2329_high_31 (Length: 299)
Name: NF2329_high_31
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2329_high_31 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 25867366 - 25867586
Alignment:
| Q |
1 |
tgagcgggaacattttgctaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgcatttaaatcattacatatttgccatgtacat |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
25867366 |
tgagcgggaaaattttgctaatacctcacttaatgcctttttcaaatttcaaatcccttcactatatgcatttaaagcattacatatttcccatgtacat |
25867465 |
T |
|
| Q |
101 |
ttacatggttgtgtataaagcagttcccatgtaaagttaaaagtaacatcggaaatgacaaatatagtctatgatgcagttccgatgcattacattcccc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
25867466 |
ttacatggttgtgtataaagcagttcccatgtaaagttaaaagtaacatcgtaaatgacaaatatagtctatgatgcaattccaatgcattacattccca |
25867565 |
T |
|
| Q |
201 |
ttttccttatatcacacactc |
221 |
Q |
| |
|
|| |||||||||||||||||| |
|
|
| T |
25867566 |
ttatccttatatcacacactc |
25867586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 16961671 - 16961443
Alignment:
| Q |
1 |
tgagcgggaacattttgctaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgc-atttaaatcattacatatttgccatgtaca |
99 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||| |||| ||| |
|
|
| T |
16961671 |
tgagcgggaaaattttgctaatacctcacttaatgccattttcaaat-------cccttcactatatgccatttaaagcattacatatttctcatgcaca |
16961579 |
T |
|
| Q |
100 |
tttacatggttgtgtataaagcagttcccatgtaaagttaaaagtaacatcggaaatgacaaatatagtctatgatgcagttccgatgcattacattccc |
199 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
16961578 |
tttatatggttgtgtataaagcagttcccatgtaaagttaaaagtaacattgtaaatgacaaatatagtctatgatgcggttccaatgcattacattccc |
16961479 |
T |
|
| Q |
200 |
cttttccttatatcacacactcaatgcctcttaacc |
235 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||||| |
|
|
| T |
16961478 |
gttatccttatatcacacgctcaatgcctcttaacc |
16961443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 286
Target Start/End: Original strand, 25868491 - 25868521
Alignment:
| Q |
256 |
ctcttctccctcattctctcccagtcacttc |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
25868491 |
ctcttctccctcattctctcccagtcacttc |
25868521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 46595788 - 46595567
Alignment:
| Q |
1 |
tgagcgggaacattttgctaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgcatttaaatcattacatatttgccatgtacat |
100 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
46595788 |
tgagcaggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgcatttaaagcattacatatttcccatgtacat |
46595689 |
T |
|
| Q |
101 |
ttacatggttgtgtataaagcagttcccatgtaaagttaaaagtaacatcggaaatgacaaata-tagtctatgatgcagttccgatgcattacattccc |
199 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||| |||||||||||| || |||||||||| ||||| ||||||||||||||| |
|
|
| T |
46595688 |
ttatatggttgtgtataaagcagttcc-------------aagtaacatcgtaaatgacaaatattaatctatgatgcggttccaatgcattacattccc |
46595602 |
T |
|
| Q |
200 |
cttttccttatatcacacactcaatgcctcttaac |
234 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |
|
|
| T |
46595601 |
cttatccttatatcacacactcaatgcctcttaac |
46595567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 286
Target Start/End: Complemental strand, 46595544 - 46595515
Alignment:
| Q |
257 |
tcttctccctcattctctcccagtcacttc |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
46595544 |
tcttctccctcattctctcccagtcacttc |
46595515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 47520835 - 47521044
Alignment:
| Q |
1 |
tgagcgggaacattttgctaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgc-atttaaatcattacatatttgccatgtaca |
99 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||| ||| |
|
|
| T |
47520835 |
tgagcgggaaaattttgctaatacctcacttaatgtcattttcaaatttcaaatcccttcactatatgccatttaaagcattacatatttcccatgcaca |
47520934 |
T |
|
| Q |
100 |
tttacatggttgtgtataaagcagttcccatgtaaagttaaaagtaacatcggaaatgacaaatatagtctatgatgcagttccgatgcattacattccc |
199 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||| ||| ||| | ||||||||||||||| |
|
|
| T |
47520935 |
tttatatggttgtgtataaagcagttccgatgtaaagttaaaagtaacattgtaaatgacaaatatagtctatgttgcggtttcaatgcattacattccc |
47521034 |
T |
|
| Q |
200 |
cttttcctta |
209 |
Q |
| |
|
|| |||||| |
|
|
| T |
47521035 |
gttatcctta |
47521044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 139; Significance: 9e-73; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 4435051 - 4435272
Alignment:
| Q |
1 |
tgagcgggaacattttgctaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgcatttaaatcattacatatttgccatgtacat |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||| |
|
|
| T |
4435051 |
tgagcgggaaaattttgctaatacctcacttaatgtcattttcaaatttcaaatcccttcactatatgcatttaaagcgttacatatttcccatgtacat |
4435150 |
T |
|
| Q |
101 |
ttacatggttgtgtataaagcagttcccatgtaaagttaaaagtaacatcggaaatgacaaata-tagtctatgatgcagttccgatgcattacattccc |
199 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| |||||||||||| || |||||||||| ||||| ||||||||||||||| |
|
|
| T |
4435151 |
ttacatggttgtgtataaagcagttcc-------------aaataacatcgtaaatgacaaatattaatctatgatgcggttccaatgcattacattccc |
4435237 |
T |
|
| Q |
200 |
cttttccttatatcacacactcaatgcctcttaac |
234 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4435238 |
cttatccttatatcacacactcaatgcctcttaac |
4435272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 69 - 233
Target Start/End: Original strand, 4091500 - 4091664
Alignment:
| Q |
69 |
catttaaatcattacatatttgccatgtacatttacatggttgtgtataaagcagttcccatgtaaagttaaaagtaacatcggaaatgacaaatatagt |
168 |
Q |
| |
|
|||||||| |||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| |
|
|
| T |
4091500 |
catttaaagcattacatatttcccatgcacatttatatggttgtgtataaagcagttcccatgtaaagttaaaaataacattgtaaatgacaaatatagt |
4091599 |
T |
|
| Q |
169 |
ctatgatgcagttccgatgcattacattccccttttccttatatcacacactcaatgcctcttaa |
233 |
Q |
| |
|
||||||||||||||| ||||||||||||||| || |||||||||||||| |||||||||||||| |
|
|
| T |
4091600 |
ctatgatgcagttccaatgcattacattcccgttatccttatatcacacgttcaatgcctcttaa |
4091664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 28057110 - 28057236
Alignment:
| Q |
1 |
tgagcgggaacattttgctaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgcatttaaatcattacatatttgccatgtacat |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
28057110 |
tgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcccttctctatatgcatttaaagcattacatatttcccatgtacat |
28057209 |
T |
|
| Q |
101 |
ttacatggttgtgtataaagcagttcc |
127 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
28057210 |
ttacatggttgtgtataaagcagttcc |
28057236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 62 - 214
Target Start/End: Complemental strand, 28057389 - 28057249
Alignment:
| Q |
62 |
ctatatgcatttaaatcattacatatttgccatgtacatttacatggttgtgtataaagcagttcccatgtaaagttaaaagtaacatcggaaatgacaa |
161 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
28057389 |
ctatatgcatttaaagcattacatatttcccatgtacatttacatggttgtgtataaagcagttcc-------------aagtaacatcgtaaatgacaa |
28057303 |
T |
|
| Q |
162 |
ata-tagtctatgatgcagttccgatgcattacattccccttttccttatatca |
214 |
Q |
| |
|
||| || |||||||||| ||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
28057302 |
atattaatctatgatgcggttccaatgcattacattccccttatccttatatca |
28057249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 4091401 - 4091469
Alignment:
| Q |
1 |
tgagcgggaacattttgctaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgc |
69 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4091401 |
tgagcgggaaaattttgttaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgc |
4091469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 286
Target Start/End: Original strand, 4435294 - 4435323
Alignment:
| Q |
257 |
tcttctccctcattctctcccagtcacttc |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
4435294 |
tcttctccctcattctctcccagtcacttc |
4435323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 6e-71; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 37720027 - 37719805
Alignment:
| Q |
1 |
tgagcgggaacattttgctaatacctcacttaatgccattttcaaatttcaaatcccttcactatatgcatttaaatcattacatatttgccatgtacat |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||||||| |||||||||| |
|
|
| T |
37720027 |
tgagcgggaagattttgctaatacctcacttaatgtcattttcaaatttcaaatcccttcactgtatgtatttaaagcattacatatttcccatgtacat |
37719928 |
T |
|
| Q |
101 |
ttacatggttgtgtataaagcagttcccatgtaaagttaaaagtaacatcggaaatgacaaata-tagtctatgatgcagttccgatgcattacattccc |
199 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| | ||||| ||||||||||||||| |
|
|
| T |
37719927 |
ttacatggttgtgtataaagcagttcc-------------aagtaacatcgtaaatgacaaatattagtctatgatacggttccaatgcattacattccc |
37719841 |
T |
|
| Q |
200 |
cttttccttatatcacacactcaatgcctcttaacc |
235 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
37719840 |
cttatccttatatcacacacttaatgcctcttaacc |
37719805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 30441102 - 30441054
Alignment:
| Q |
115 |
ataaagcagttcccatgtaaagttaaaagtaacatcggaaatgacaaat |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
30441102 |
ataaagcagttcccatgtaaagttaaaagtaacattgtaaatgacaaat |
30441054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 30441276 - 30441237
Alignment:
| Q |
30 |
ttaatgccattttcaaatttcaaatcccttcactatatgc |
69 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30441276 |
ttaatgccattttcaaatttcaaatctcttcactatatgc |
30441237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 286
Target Start/End: Complemental strand, 37719786 - 37719756
Alignment:
| Q |
256 |
ctcttctccctcattctctcccagtcacttc |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
37719786 |
ctcttctccctcattctctcccagtcacttc |
37719756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 20389978 - 20390037
Alignment:
| Q |
1 |
tgagcgggaacattttgctaatacctcacttaatgccattttcaaatttcaaatcccttc |
60 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20389978 |
tgagcgggaaaattttgctaatacctcacttaatgccattttcaaatttcaaatcccttc |
20390037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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