View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2329_high_36 (Length: 257)
Name: NF2329_high_36
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2329_high_36 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 43037273 - 43037032
Alignment:
| Q |
1 |
ccttagggaccgattaactctgcgtagattgactgaatgcagaaagcgccttccactggcaggtgatcgtgtttttcacaggatttattgttactcatgt |
100 |
Q |
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| T |
43037273 |
ccttagggaccgattaactctgcgtagattgactgaacgcagaaagc--cttcca------ggtgatcgtgtttatcacatgatttatcgttactcatgt |
43037182 |
T |
|
| Q |
101 |
cagcattctcacttctgatatctccagatgttgtcaccaaaaaccttcctcgattgacaaaacgtccttattgattttacttgcagttaatgagtttacc |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||| | |||||||||||||||| |
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| T |
43037181 |
cagcattctcacttctgatatctccaggtgttgtcaccaaaaaccttccccgattgacaaaacatccttattgattttactcgtagttaatgagtttacc |
43037082 |
T |
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| Q |
201 |
atttacattaatttttccttaaaatgtaaaattttggtcaatattcttcga |
251 |
Q |
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| T |
43037081 |
atttacattaatttttccttaaaatgt-aaattttggtcaatattattcga |
43037032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 5 - 251
Target Start/End: Original strand, 739590 - 739827
Alignment:
| Q |
5 |
agggaccgattaactctgcgtagattgactgaatgcagaaagcgccttccactggcaggtgatcgtgtttttcacaggatttattgttactcatgtcagc |
104 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||| |||||| ||||| ||||||| ||||||||||||| | |
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| T |
739590 |
agggaccgattaactctgcgtagattgactgaacgcagaaagc--cttcca------ggtgatagtgtttatcacatgatttatagttactcatgtcaac |
739681 |
T |
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| Q |
105 |
attctcacttctgatatctccagatgttgtcaccaaaaaccttcctcgattgacaaaacgtccttattgattttacttgcagttaatgagtttaccattt |
204 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||| | |||||||||||||||||||| |
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| T |
739682 |
attcacacttctgatatctccaggtgttgtcaccaaaaaccttccccgattgacaaaacatccttattgattttactcgtagttaatgagtttaccattt |
739781 |
T |
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| Q |
205 |
acattaatttttccttaaaatgtaaaattttggtcaatattcttcga |
251 |
Q |
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| T |
739782 |
acattaatttttccttaaaatgt-aaattttggtcaatattattcga |
739827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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