View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2329_high_39 (Length: 255)
Name: NF2329_high_39
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2329_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 41979672 - 41979877
Alignment:
| Q |
30 |
ataaaccctatactgactaacatagtaagaacaatttaataaacaaatgcacctgatcccttcattcaaatgatgatatagtgggggaataaaaaagaaa |
129 |
Q |
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| T |
41979672 |
ataaaccctatactgactaacatagtaagaacaatttaataaacaaatgcacctgatcccttcattcaaatgatgatatagtgggggaataaaaaagaaa |
41979771 |
T |
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| Q |
130 |
atcagctatgattttcataaccaagtagagaacaaaatattagaagattcattgaaaaactcatagaaataaagagtgaacaaactactaattagaactc |
229 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41979772 |
atcagctatgattttcataaccatgtagagaacaaaatattagaaaaatcattgaaaaactcatagaaataaagagtgaacaaactactaattagaactc |
41979871 |
T |
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| Q |
230 |
gtaata |
235 |
Q |
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|||||| |
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| T |
41979872 |
gtaata |
41979877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 187
Target Start/End: Original strand, 41983907 - 41984029
Alignment:
| Q |
64 |
tttaataaacaaatgcacctgatcccttcattcaaatgatgatatagtgggggaataaaaaagaaaatcagctatgattttcataaccaagtagagaaca |
163 |
Q |
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| T |
41983907 |
tttaataaaccaatgcacaggatcctttcattcaaatgatgatacaatgggagaa-aaataggaaactcggctttgtttttcattaccaagaagagaaga |
41984005 |
T |
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| Q |
164 |
aaatattagaagattcattgaaaa |
187 |
Q |
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| T |
41984006 |
aaatatttgaagattcattgaaaa |
41984029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 44680236 - 44680173
Alignment:
| Q |
45 |
actaacatagtaagaacaatttaataaacaaatgcacctgatccc-ttcattcaaatgatgata |
107 |
Q |
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| T |
44680236 |
actaacatagtatgagcaatttaataaaccaatgcacatgatccctttcattcaaattatgata |
44680173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 18990685 - 18990752
Alignment:
| Q |
45 |
actaacatagtaagaacaatttaataaacaaatgcacctgatcccttcattcaaatgatgatatagtg |
112 |
Q |
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|||||||||||| ||||||||||||||| ||||||| ||| |||||||||||| |||||| |||| |
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| T |
18990685 |
actaacatagtacaaacaatttaataaaccaatgcacacaatcacttcattcaaattatgatacagtg |
18990752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 3686377 - 3686436
Alignment:
| Q |
45 |
actaacatagtaagaacaatttaataaacaaatgcacctgatcccttcattcaaatgatgata |
107 |
Q |
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||||||||||||||||||||||| ||||||| |||| ||||||| |||||||||||||| |
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| T |
3686377 |
actaacatagtaagaacaatttagaaaacaaaagcacaagatccct---ttcaaatgatgata |
3686436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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