View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2329_high_45 (Length: 239)

Name: NF2329_high_45
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2329_high_45
NF2329_high_45
[»] chr2 (2 HSPs)
chr2 (1-222)||(13885556-13885777)
chr2 (1-222)||(14025681-14025902)
[»] chr5 (1 HSPs)
chr5 (4-222)||(7685613-7685830)


Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 13885777 - 13885556
Alignment:
Q  1 ttcaacattgtgattgactcgttatcttctgtaagaaaatttggaggcttgacaatctgttgatggaacatgtgtttaggtggtgaggctcattttctgg 100  Q
    ||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13885777 ttcaacattgtgattgacttggtatcttctgtaagaaaatttggagacttgacaatctgttgatggaacatgtgtttaggtggtgaggctcattttctgg 13885678  T
Q  101 tgaccttttctatggaagtaaatgatggattattagctacaaatcttccatctcatttgatcaacacaactgaatttaagcacatgaataattatcagtg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13885677 tgaccttttctatggaagtaaatgatggattattagctacaaatcttccatctcatttgatcaacacaactgaatttaagcacaggaataattatcagtg 13885578  T
Q  201 gcagcctcttcaaacatatgta 222  Q
    ||||||||||||||||||||||    
T  13885577 gcagcctcttcaaacatatgta 13885556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 14025902 - 14025681
Alignment:
Q  1 ttcaacattgtgattgactcgttatcttctgtaagaaaatttggaggcttgacaatctgttgatggaacatgtgtttaggtggtgaggctcattttctgg 100  Q
    ||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14025902 ttcaacattgtgattgacttggtatcttctgtaagaaaatttggagacttgacaatctgttgatggaacatgtgtttaggtggtgaggctcattttctgg 14025803  T
Q  101 tgaccttttctatggaagtaaatgatggattattagctacaaatcttccatctcatttgatcaacacaactgaatttaagcacatgaataattatcagtg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14025802 tgaccttttctatggaagtaaatgatggattattagctacaaatcttccatctcatttgatcaacacaactgaatttaagcacaggaataattatcagtg 14025703  T
Q  201 gcagcctcttcaaacatatgta 222  Q
    ||||||||||||||||||||||    
T  14025702 gcagcctcttcaaacatatgta 14025681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 7685830 - 7685613
Alignment:
Q  4 aacattgtgattgactcgttatcttctgtaagaaaatttggaggcttgacaatctgttgatggaacatgtgtttaggtggtgaggctcattttctggtga 103  Q
    ||||||||||||| || | |  |||||  ||||||| |||||||||| ||| |||||||||||| |||||||| ||||||||||||||||||||| ||||    
T  7685830 aacattgtgattggcttgatgccttcttcaagaaaacttggaggcttaacattctgttgatggatcatgtgtt-aggtggtgaggctcattttctagtga 7685732  T
Q  104 ccttttctatggaagtaaatgatggattattagctacaaatcttccatctcatttgatcaacacaactgaatttaagcacatgaataattatcagtggca 203  Q
    | |||||||||||||||||||||||| ||||||  ||||||||||||||||| ||||| |||||||||||| | |||||||||||||| | |||||||||    
T  7685731 cattttctatggaagtaaatgatggactattagaaacaaatcttccatctcacttgataaacacaactgaactgaagcacatgaataactttcagtggca 7685632  T
Q  204 gcctcttcaaacatatgta 222  Q
    |||||||||||||||||||    
T  7685631 gcctcttcaaacatatgta 7685613  T

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