View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2329_high_50 (Length: 236)

Name: NF2329_high_50
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2329_high_50
NF2329_high_50
[»] chr8 (12 HSPs)
chr8 (1-81)||(24862828-24862908)
chr8 (1-81)||(28168274-28168354)
chr8 (1-81)||(18438950-18439030)
chr8 (1-81)||(22550546-22550626)
chr8 (1-81)||(38872623-38872702)
chr8 (17-81)||(26455347-26455411)
chr8 (17-81)||(41276557-41276621)
chr8 (1-81)||(44051917-44051990)
chr8 (44-81)||(41855683-41855720)
chr8 (44-81)||(42604930-42604967)
chr8 (17-57)||(41016750-41016790)
chr8 (47-81)||(40703844-40703878)
[»] chr5 (17 HSPs)
chr5 (1-81)||(3602831-3602911)
chr5 (1-83)||(41799140-41799222)
chr5 (1-81)||(541236-541316)
chr5 (1-81)||(34682554-34682634)
chr5 (1-81)||(20199829-20199909)
chr5 (8-81)||(1398951-1399024)
chr5 (17-81)||(11348174-11348238)
chr5 (17-81)||(30887107-30887171)
chr5 (19-81)||(41202057-41202119)
chr5 (17-81)||(25499562-25499626)
chr5 (19-81)||(35566747-35566809)
chr5 (17-81)||(18309745-18309808)
chr5 (17-57)||(8539240-8539280)
chr5 (18-53)||(6133-6168)
chr5 (1-32)||(6107-6138)
chr5 (1-31)||(8575032-8575062)
chr5 (47-81)||(35926760-35926794)
[»] chr4 (17 HSPs)
chr4 (1-81)||(37959404-37959484)
chr4 (1-81)||(56140374-56140454)
chr4 (1-81)||(1044215-1044295)
chr4 (1-81)||(9490959-9491039)
chr4 (1-81)||(34528470-34528550)
chr4 (1-81)||(49422403-49422483)
chr4 (1-81)||(33384103-33384183)
chr4 (1-81)||(51426836-51426916)
chr4 (1-78)||(49572585-49572662)
chr4 (1-81)||(39590250-39590330)
chr4 (17-81)||(34151937-34152001)
chr4 (17-81)||(37867941-37868005)
chr4 (17-81)||(44558978-44559042)
chr4 (17-81)||(956114-956178)
chr4 (18-81)||(9718739-9718802)
chr4 (18-81)||(4783987-4784050)
chr4 (44-81)||(6281212-6281249)
[»] chr3 (25 HSPs)
chr3 (1-81)||(43478504-43478584)
chr3 (1-81)||(45099108-45099188)
chr3 (1-81)||(51694191-51694271)
chr3 (1-81)||(41579406-41579486)
chr3 (1-81)||(46345246-46345326)
chr3 (1-81)||(49611630-49611710)
chr3 (1-71)||(44490638-44490708)
chr3 (1-81)||(34691940-34692020)
chr3 (1-78)||(24701032-24701109)
chr3 (17-81)||(43571368-43571432)
chr3 (1-81)||(49217392-49217472)
chr3 (17-81)||(7247544-7247608)
chr3 (17-81)||(13894568-13894632)
chr3 (17-81)||(44223344-44223408)
chr3 (17-81)||(52568101-52568165)
chr3 (1-57)||(50998360-50998416)
chr3 (18-81)||(20374631-20374694)
chr3 (17-81)||(2429957-2430015)
chr3 (19-57)||(36136295-36136333)
chr3 (17-57)||(2267382-2267422)
chr3 (17-57)||(4003050-4003090)
chr3 (41-81)||(34645927-34645967)
chr3 (45-81)||(55267770-55267806)
chr3 (44-81)||(55205624-55205661)
chr3 (1-32)||(54391759-54391790)
[»] chr2 (11 HSPs)
chr2 (1-81)||(3942864-3942944)
chr2 (1-81)||(23786429-23786509)
chr2 (1-81)||(19470258-19470338)
chr2 (1-81)||(23409198-23409278)
chr2 (17-81)||(35493015-35493079)
chr2 (17-81)||(16583268-16583332)
chr2 (17-81)||(40676067-40676131)
chr2 (18-81)||(2918018-2918081)
chr2 (17-81)||(43492947-43493011)
chr2 (17-68)||(8268449-8268500)
chr2 (44-81)||(41497804-41497841)
[»] chr7 (15 HSPs)
chr7 (1-81)||(48194316-48194396)
chr7 (1-81)||(34142344-34142424)
chr7 (4-81)||(28977872-28977950)
chr7 (1-81)||(28113090-28113170)
chr7 (17-81)||(21185949-21186013)
chr7 (17-81)||(40590220-40590284)
chr7 (17-81)||(42683889-42683953)
chr7 (17-81)||(10225549-10225613)
chr7 (17-81)||(36392456-36392520)
chr7 (17-81)||(46860845-46860909)
chr7 (21-81)||(45361967-45362027)
chr7 (18-81)||(41623565-41623628)
chr7 (23-81)||(48272135-48272194)
chr7 (17-57)||(10524024-10524064)
chr7 (17-57)||(17840587-17840627)
[»] chr6 (12 HSPs)
chr6 (1-81)||(13404302-13404382)
chr6 (1-81)||(29067957-29068037)
chr6 (9-81)||(29076009-29076081)
chr6 (1-81)||(29083203-29083283)
chr6 (1-81)||(29109546-29109626)
chr6 (9-81)||(29110981-29111053)
chr6 (1-81)||(32026260-32026340)
chr6 (1-77)||(34801812-34801888)
chr6 (17-81)||(13616565-13616629)
chr6 (18-81)||(14124164-14124227)
chr6 (18-81)||(14124299-14124362)
chr6 (45-81)||(35019928-35019964)
[»] chr1 (20 HSPs)
chr1 (1-81)||(13974419-13974499)
chr1 (1-81)||(36911365-36911445)
chr1 (1-81)||(51271295-51271375)
chr1 (1-81)||(29760827-29760908)
chr1 (1-81)||(14172396-14172476)
chr1 (1-81)||(44336561-44336641)
chr1 (1-81)||(42570421-42570501)
chr1 (1-81)||(48227997-48228077)
chr1 (17-81)||(18974800-18974864)
chr1 (17-81)||(26633864-26633928)
chr1 (1-81)||(49398141-49398221)
chr1 (17-83)||(41803716-41803782)
chr1 (17-81)||(6437202-6437266)
chr1 (17-81)||(27485371-27485435)
chr1 (17-81)||(46142100-46142164)
chr1 (23-81)||(24362734-24362792)
chr1 (22-71)||(13148734-13148783)
chr1 (44-81)||(29437424-29437461)
chr1 (44-79)||(49925206-49925241)
chr1 (4-32)||(24362672-24362700)
[»] scaffold0618 (1 HSPs)
scaffold0618 (1-81)||(4198-4278)
[»] scaffold0176 (2 HSPs)
scaffold0176 (1-81)||(3269-3349)
scaffold0176 (1-57)||(363-419)
[»] scaffold0192 (1 HSPs)
scaffold0192 (17-81)||(16736-16800)


Alignment Details
Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 24862908 - 24862828
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24862908 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 24862828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 28168354 - 28168274
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28168354 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 28168274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 18438950 - 18439030
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18438950 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgatgtagaa 18439030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 22550626 - 22550546
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  22550626 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttagatttaggttttgattaatcgttgtagaa 22550546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 38872702 - 38872623
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38872702 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttagg-ttaggttttgatgaatcgttgtagaa 38872623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 26455411 - 26455347
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26455411 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 26455347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 41276621 - 41276557
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41276621 ggttagagttgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 41276557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 44051990 - 44051917
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||| |||||||||||||||||    
T  44051990 atgttaggatagtttaggttagaattg-------acttttattgaattgttaggtttaggtttagatgaatcgttgtagaa 44051917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 41855683 - 41855720
Alignment:
Q  44 gaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41855683 gaattgttaggtttaggttttgatgaatcgttgtagaa 41855720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 42604967 - 42604930
Alignment:
Q  44 gaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42604967 gaattgttaggtttaggttttgatgaatcgttgtagaa 42604930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 41016750 - 41016790
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggttt 57  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  41016750 ggttagaatggttagagaacttttattgaattgttaggttt 41016790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 81
Target Start/End: Complemental strand, 40703878 - 40703844
Alignment:
Q  47 ttgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||    
T  40703878 ttgttaggtttaggttttgatgaatcgttgtagaa 40703844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 3602911 - 3602831
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3602911 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 3602831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 41799140 - 41799222
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaact 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41799140 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttagattttgatgaatcgttgtagaact 41799222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 541236 - 541316
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  541236 atgttaggatagtttaggttagaattgttagagaaattttattgaattgttaggtttaggttttgatgaatcgttgtagaa 541316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 34682554 - 34682634
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34682554 atgttaggatagtttaggttagaattgttagagaatttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 34682634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 20199909 - 20199829
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  20199909 atgttatgatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaataggtgtagaa 20199829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 1398951 - 1399024
Alignment:
Q  8 gatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1398951 gatagtttatgttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatagttgtagaa 1399024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 11348238 - 11348174
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11348238 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 11348174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 30887171 - 30887107
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30887171 ggttagaattgttagagaacttttattgaattgttagatttaggttttgatgaatcgttgtagaa 30887107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 41202057 - 41202119
Alignment:
Q  19 ttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41202057 ttagaattcttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 41202119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 25499626 - 25499562
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  25499626 ggttagaattgttagagaacttttattgaattgttagatttagattttgatgaatcgttgtagaa 25499562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 35566809 - 35566747
Alignment:
Q  19 ttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||| |||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||    
T  35566809 ttagaactgttagagaactcttattcaattgttaggtttaggttttgataaatcgttgtagaa 35566747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 18309808 - 18309745
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||| ||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||    
T  18309808 ggttaaaattgttagagaacttttatttaattgttaggttta-gatttgatgaatcgttgtagaa 18309745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 8539280 - 8539240
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggttt 57  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8539280 ggttagaattgttagagaacttttattgaattgttaggttt 8539240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 6133 - 6168
Alignment:
Q  18 gttagaattgttagagaacttttattgaattgttag 53  Q
    ||||||||||||||||||||||||||||||||||||    
T  6133 gttagaattgttagagaacttttattgaattgttag 6168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 6107 - 6138
Alignment:
Q  1 atgttaggatagtttaggttagaattgttaga 32  Q
    ||||||||||||||||||||||||||||||||    
T  6107 atgttaggatagtttaggttagaattgttaga 6138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 8575032 - 8575062
Alignment:
Q  1 atgttaggatagtttaggttagaattgttag 31  Q
    |||||||||||||||||||||||||||||||    
T  8575032 atgttaggatagtttaggttagaattgttag 8575062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 35926760 - 35926794
Alignment:
Q  47 ttgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||||||||| |||||||||    
T  35926760 ttgttaggtttaggttttgatgaattgttgtagaa 35926794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 37959484 - 37959404
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37959484 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 37959404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 56140454 - 56140374
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56140454 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 56140374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 1044295 - 1044215
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1044295 atgttaagatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 1044215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 9491039 - 9490959
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9491039 atgttaggatattttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 9490959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 34528470 - 34528550
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34528470 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttagattttgatgaatcgttgtagaa 34528550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 49422403 - 49422483
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  49422403 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgcagaa 49422483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 33384103 - 33384183
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  33384103 atgttaggatagtttaggttagaattgttagagaagttttattgaattgttaggtttaggttttgatgaattgttgtagaa 33384183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 51426836 - 51426916
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51426836 atgttaggatagtttaggttaaaatggttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 51426916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 49572662 - 49572585
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgta 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  49572662 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttagttttatgttttgatgaatcgttgta 49572585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 39590330 - 39590250
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39590330 atgttaggatagtataggttagaattgttagaaaacttttattgaattgttaggtttaagttttgatgaatcgttgtagaa 39590250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 34151937 - 34152001
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34151937 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 34152001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 37868005 - 37867941
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37868005 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 37867941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 44558978 - 44559042
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44558978 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 44559042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 956114 - 956178
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  956114 ggttagaattgttagaaaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 956178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 9718802 - 9718739
Alignment:
Q  18 gttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||| |||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  9718802 gttataattgttatagaagttttattgaattgttaggtttaggttttgatgaattgttgtagaa 9718739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 4783987 - 4784050
Alignment:
Q  18 gttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||| |||||||| |||| ||| ||||||||||||||||||||||||||||||| |||||||||    
T  4783987 gttataattgttacagaagtttcattgaattgttaggtttaggttttgatgaattgttgtagaa 4784050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 6281212 - 6281249
Alignment:
Q  44 gaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  6281212 gaattgttaggtttagattttgataaatcgttgtagaa 6281249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 43478584 - 43478504
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43478584 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 43478504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 45099108 - 45099188
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45099108 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 45099188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 51694191 - 51694271
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51694191 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 51694271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 41579486 - 41579406
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  41579486 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggcttaggttttgatgaatcgttatagaa 41579406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 46345246 - 46345326
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46345246 atgttagaatagtttaggttagaattgttagataacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 46345326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 49611710 - 49611630
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  49611710 atgttaggatagtttaggttagaattgttagagaactttttttgaattgttaggtttaggttttgatgaatccttgtagaa 49611630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 44490638 - 44490708
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaat 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44490638 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaat 44490708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 34691940 - 34692020
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  34691940 atgttaggatagtttaagttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcattgcagaa 34692020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 24701032 - 24701109
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgta 78  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  24701032 atgttaggataatttaggttagaattgttagagaacttttattgaattgttaggtttagattttgattaatcgttgta 24701109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 43571432 - 43571368
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43571432 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 43571368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 49217392 - 49217472
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  49217392 atgttgggatagtttatgttagaaatgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgcagaa 49217472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 7247608 - 7247544
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7247608 ggttagaattgttagagaacctttattgaattgttaggtttaggttttgatgaatcgttgtagaa 7247544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 13894568 - 13894632
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13894568 ggttagaattgttagagaacttttattgaattgttagatttaggttttgatgaatcgttgtagaa 13894632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 44223344 - 44223408
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44223344 ggttagaattgttaaagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 44223408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 52568101 - 52568165
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52568101 ggttagaattgttaaagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 52568165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 50998416 - 50998360
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggttt 57  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  50998416 atgttaggatagtttaggttagaatggttagagaacttttattgaattgttaggttt 50998360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 20374631 - 20374694
Alignment:
Q  18 gttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  20374631 gttagaattgttatagaagttttattgaattgttaggtttaggttttgatgaatggttgtagaa 20374694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 2430015 - 2429957
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||    
T  2430015 ggttagaattgttagagaacttttattgaattgttag------gttttgatgaatcgttgtagaa 2429957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 36136333 - 36136295
Alignment:
Q  19 ttagaattgttagagaacttttattgaattgttaggttt 57  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36136333 ttagaattgttagagaacttttattgaattgttaggttt 36136295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 2267382 - 2267422
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggttt 57  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  2267382 ggttagaattgttagagaatttttattgaattgttaggttt 2267422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 4003050 - 4003090
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggttt 57  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  4003050 ggttagaattgttggagaacttttattgaattgttaggttt 4003090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 34645927 - 34645967
Alignment:
Q  41 attgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  34645927 attgaattgttaggtttaggttttgatgattcgttgtagaa 34645967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 55267770 - 55267806
Alignment:
Q  45 aattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||    
T  55267770 aattgttaggtttaggttttgatgaatcgttgtagaa 55267806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 55205624 - 55205661
Alignment:
Q  44 gaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  55205624 gaattgttaagtttaggttttgatgaatcgttgtagaa 55205661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 54391790 - 54391759
Alignment:
Q  1 atgttaggatagtttaggttagaattgttaga 32  Q
    ||||||||||||||||||||||||||||||||    
T  54391790 atgttaggatagtttaggttagaattgttaga 54391759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 3942944 - 3942864
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3942944 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 3942864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 23786429 - 23786509
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23786429 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttagatttaggttttgatgaatcgttgtagaa 23786509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 19470258 - 19470338
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19470258 atgttaagatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaattgttgtagaa 19470338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 23409278 - 23409198
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  23409278 atgttaggatagtttaggttagaattgttagagaactttgattgaactgttaggtttaggttttgatgaatcgttgtagaa 23409198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 35493079 - 35493015
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35493079 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 35493015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 16583332 - 16583268
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16583332 ggttagaattgttagagaacttttatttaattgttaggtttaggttttgatgaatcgttgtagaa 16583268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 40676067 - 40676131
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40676067 ggttagaattgttagagaacttttattgaattgttaggtttacgttttgatgaatcgttgtagaa 40676131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 2918018 - 2918081
Alignment:
Q  18 gttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2918018 gttagaattgttagagaacttttattgaattgttaggttgaggttttgatgaatcgttgtagaa 2918081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 43493011 - 43492947
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  43493011 ggttagaattgttagagatcttttattgaattgttaggtttagattttgatgaatcgttgtagaa 43492947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 8268500 - 8268449
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatg 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8268500 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatg 8268449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 41497804 - 41497841
Alignment:
Q  44 gaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41497804 gaattgttaggtttaggttttgatgaatcgttgtagaa 41497841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 48194396 - 48194316
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48194396 atgttaggattgtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 48194316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 34142424 - 34142344
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34142424 atgttaggataatttaggttagaattgttagagaacttttattgaattgttaggtttatgttttgatgaatcgttgtagaa 34142344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 28977872 - 28977950
Alignment:
Q  4 ttaggatagtttaggttagaattgttagagaactttt-attgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28977872 ttaggatagtttaggttagaattgttagagaactttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 28977950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 28113090 - 28113170
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28113090 atgttaggatattttaggttagaattgttatagaacttttattgaattgttaggtttaggttttgatgaatcgtggtagaa 28113170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 21185949 - 21186013
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21185949 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 21186013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 40590284 - 40590220
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40590284 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 40590220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 42683953 - 42683889
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42683953 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 42683889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 10225613 - 10225549
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10225613 ggttagaattgttagataacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 10225549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 36392456 - 36392520
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36392456 ggttagaattgttagagaacttttattgaattgttaggtttatgttttgatgaatcgttgtagaa 36392520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 46860845 - 46860909
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  46860845 ggttagagttgttagagaacttttattgaattgttagatttaggttttgatgaatcgttgtagaa 46860909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 45361967 - 45362027
Alignment:
Q  21 agaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  45361967 agaattgttagagaccttttattgaattgttaggtttaggttttgatgaatcattgtagaa 45362027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 41623628 - 41623565
Alignment:
Q  18 gttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||| ||||||||||||| |||||| ||||||||| ||||||||||||||||||||    
T  41623628 gttagaattgtttgagaacttttattaaattgtcaggtttagggtttgatgaatcgttgtagaa 41623565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 48272194 - 48272135
Alignment:
Q  23 aattgttagagaacttttattgaattgttaggttta-ggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||    
T  48272194 aattgttagagaacttttattgaattgttaggtttattgttttaatgaatcgttgtagaa 48272135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 10524064 - 10524024
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggttt 57  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  10524064 ggttagaattgttagagaacttttattgaattgttaggttt 10524024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 17840627 - 17840587
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggttt 57  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  17840627 ggttagaattgttagagaacttttattgaattgttaggttt 17840587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 13404382 - 13404302
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13404382 atgttaggatagtttaggttaaaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 13404302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 29068037 - 29067957
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29068037 atgttaggatagtttaggttagaattgttacagaacttttattgaattgttaagtttaggttttgatgaatcgttgtagaa 29067957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 29076081 - 29076009
Alignment:
Q  9 atagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29076081 atagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 29076009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 29083283 - 29083203
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29083283 atgttaggatagtttaggttagaattgttacagaacttttattgaattgttaagtttaggttttgatgaatcgttgtagaa 29083203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 29109626 - 29109546
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29109626 atgttaggatagtttaggttagaattgttacagaacttttattgaattgttaagtttaggttttgatgaatcgttgtagaa 29109546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 29111053 - 29110981
Alignment:
Q  9 atagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29111053 atagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 29110981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 32026260 - 32026340
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32026260 atgttaggatagtttaggttagaatggttagagaacttttattgaattgttaggtttaggttttgatgaatcgtcgtagaa 32026340  T

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Target: chr6; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 34801812 - 34801888
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgt 77  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34801812 atgttaggatactttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgt 34801888  T

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Target: chr6; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 13616565 - 13616629
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13616565 ggttagaattgttagagaacatttattgaattgttaggtttaggttttgatgaatcgttgtagaa 13616629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 14124227 - 14124164
Alignment:
Q  18 gttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||| |||||||| |||| |||||||||||||||||||||||||||||| | || |||||||||    
T  14124227 gttataattgttatagaagttttattgaattgttaggtttaggttttgaaggattgttgtagaa 14124164  T

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Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 14124362 - 14124299
Alignment:
Q  18 gttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||| |||||||| |||| |||||||||||||||||||||||||||||| | || |||||||||    
T  14124362 gttataattgttatagaagttttattgaattgttaggtttaggttttgaaggattgttgtagaa 14124299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 35019928 - 35019964
Alignment:
Q  45 aattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||    
T  35019928 aattgttaggtttaggttttgatgaatcgttgtagaa 35019964  T

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Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 13974499 - 13974419
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13974499 atgttaggatagttttggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 13974419  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 36911445 - 36911365
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36911445 atgttaggataatttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 36911365  T

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Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 51271375 - 51271295
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51271375 atgttaggataatttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 51271295  T

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Target: chr1; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 29760827 - 29760908
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaactttt-attgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29760827 atgttaggatagtttaggttagaattgttagagaactttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 29760908  T

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Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 14172396 - 14172476
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14172396 atgttaggataatttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcggtgtagaa 14172476  T

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Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 44336561 - 44336641
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  44336561 atgttaggatagtttaggttagaattgttagagaatttttattgaattgttaggtttaagttttgatgaatcgttgtagaa 44336641  T

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Target: chr1; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 42570421 - 42570501
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42570421 atgttaggatagtttaggttagaattgttaaataacttttattgaattgttaagtttaggttttgatgaatcgttgtagaa 42570501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 48228077 - 48227997
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  48228077 atgttaggataatttaggttagaatggttagagaacttttattgaattgttaggtttaggttttgatgaatcgttttagaa 48227997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 18974864 - 18974800
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18974864 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 18974800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 26633864 - 26633928
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26633864 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 26633928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 49398221 - 49398141
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||| |||||    
T  49398221 atgttaggatagtttaggttagaatggttagaaaacttttattgaattgttagatttaggttttgatgaatcgttatagaa 49398141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 41803782 - 41803716
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaact 83  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41803782 ggttaaaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaact 41803716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 6437266 - 6437202
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6437266 ggttagaattgttagtgaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 6437202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 27485371 - 27485435
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27485371 ggttagaattgttagagaacttttattgaattgttaggtttaagttttgatgaatcgttgtagaa 27485435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 46142100 - 46142164
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  46142100 ggttagaattgttagagaactttcattgaattgttaggtttaggttttgatgaatcgttgtagaa 46142164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 24362734 - 24362792
Alignment:
Q  23 aattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  24362734 aattgttatagaagttttattgaattgttaggtttaggttttgatgaattgttgtagaa 24362792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 13148783 - 13148734
Alignment:
Q  22 gaattgttagagaacttttattgaattgttaggtttaggttttgatgaat 71  Q
    ||||||||| |||| ||||||||||||| |||||||||||||||||||||    
T  13148783 gaattgttatagaagttttattgaattgataggtttaggttttgatgaat 13148734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 29437461 - 29437424
Alignment:
Q  44 gaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29437461 gaattgttaggtttaggttttgatgaatcgttgtagaa 29437424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 79
Target Start/End: Original strand, 49925206 - 49925241
Alignment:
Q  44 gaattgttaggtttaggttttgatgaatcgttgtag 79  Q
    ||||||||||||||||||||||||||||||||||||    
T  49925206 gaattgttaggtttaggttttgatgaatcgttgtag 49925241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 24362672 - 24362700
Alignment:
Q  4 ttaggatagtttaggttagaattgttaga 32  Q
    |||||||||||||||||||||||||||||    
T  24362672 ttaggatagtttaggttagaattgttaga 24362700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 4198 - 4278
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4198 atgttagaatagtttaggttagaattgttagataacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 4278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 3349 - 3269
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3349 atgttaggataatttaggttagaattgttagagaacttttattgaattgttaggtttatgttttgatgaatcgttgtagaa 3269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 419 - 363
Alignment:
Q  1 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggttt 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  419 atgttaggatagtttaggttagaattgttagagaacttttattgaattgttaggttt 363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 16736 - 16800
Alignment:
Q  17 ggttagaattgttagagaacttttattgaattgttaggtttaggttttgatgaatcgttgtagaa 81  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  16736 ggttagaattgttagagaaattttattaaattgttaggtttaggttttgatgaatcgttgtagaa 16800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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