View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2329_high_54 (Length: 226)
Name: NF2329_high_54
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2329_high_54 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 47805222 - 47805435
Alignment:
| Q |
1 |
tcttattttttccactgatgttcaaatttttctgatctataacaagtttaagttagatgtatgttttggattctagcaattgaatactcagatttcataa |
100 |
Q |
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| T |
47805222 |
tcttattttttccactgatgttcaaatttttctgatctataacaagtttaagttagatgtatgttttggattctagcaattgaatactcagatttcataa |
47805321 |
T |
|
| Q |
101 |
aaccaaattctgtagccaatccttttattagaataacaattatagtcaatcacaattctctagtgagt-nnnnnnnntagccttagacatatagtaaaat |
199 |
Q |
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| T |
47805322 |
aaccaaattctgtagccaatccttttattagaataacaattatagtcaatcacaattctctagtgagtaaaaaaaaatagccttagacatatagtaaaat |
47805421 |
T |
|
| Q |
200 |
tcattacttagctt |
213 |
Q |
| |
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|||||||||||||| |
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| T |
47805422 |
tcattacttagctt |
47805435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 27 - 168
Target Start/End: Complemental strand, 43295801 - 43295661
Alignment:
| Q |
27 |
tttttctgatctataacaagtttaagttagatgtatgttttggattctagcaattgaatactcagatttcataaaaccaaattctgtagccaatcctttt |
126 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43295801 |
tttttctgatctataacaagtttaggttagatgtatgttttggatcctagcaattgaatactcagatttcataaagccaaattctgtagccaatcctttt |
43295702 |
T |
|
| Q |
127 |
attagaataacaattatagtcaatcacaattctctagtgagt |
168 |
Q |
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| T |
43295701 |
attagaataacaagtatact-aatcacaattctctagtgagt |
43295661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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