View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2329_high_56 (Length: 223)

Name: NF2329_high_56
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2329_high_56
NF2329_high_56
[»] chr6 (2 HSPs)
chr6 (1-178)||(26332473-26332651)
chr6 (1-108)||(15668468-15668575)
[»] chr4 (7 HSPs)
chr4 (1-178)||(13091722-13091900)
chr4 (1-178)||(44743655-44743833)
chr4 (8-176)||(22591750-22591919)
chr4 (1-90)||(13091625-13091714)
chr4 (32-78)||(23628382-23628428)
chr4 (32-78)||(24304286-24304332)
chr4 (141-178)||(10154563-10154600)
[»] chr3 (2 HSPs)
chr3 (43-178)||(36332072-36332208)
chr3 (32-78)||(12997304-12997350)
[»] scaffold0438 (1 HSPs)
scaffold0438 (55-178)||(2887-3011)
[»] chr1 (4 HSPs)
chr1 (43-178)||(38835441-38835574)
chr1 (141-178)||(32605318-32605355)
chr1 (32-78)||(23730785-23730831)
chr1 (32-78)||(45589176-45589222)
[»] chr7 (4 HSPs)
chr7 (49-122)||(10094926-10094999)
chr7 (103-178)||(9789660-9789736)
chr7 (35-78)||(20481788-20481831)
chr7 (141-178)||(10094293-10094330)
[»] chr8 (4 HSPs)
chr8 (103-167)||(24957145-24957210)
chr8 (141-177)||(15588017-15588053)
chr8 (32-78)||(15309930-15309976)
chr8 (32-78)||(15490299-15490345)
[»] scaffold0198 (1 HSPs)
scaffold0198 (32-78)||(15726-15772)
[»] chr5 (2 HSPs)
chr5 (32-78)||(31958877-31958923)
chr5 (103-136)||(34962498-34962531)
[»] chr2 (1 HSPs)
chr2 (141-178)||(21022423-21022460)


Alignment Details
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 26332651 - 26332473
Alignment:
Q  1 acattaatgaagattcgagttcatacaatttaagagtacaagatggtagctacatggatagagttagaaatcaaatagccactaagttgttggaaaacaa 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  26332651 acattactgaagattcgagttcatacaatttaagagtacaagatgtgagctacatggatagagctagaaatcaaatagccactaagttgttggaagacaa 26332552  T
Q  101 aaatcgttcaagtttatgatgtgtcatgtttctaatgct-tattattttcaaactctttcaatttaatttatgataatg 178  Q
    |||||||||||||||||||||||| |||||||||||| |  |||||||||||||||||||||||||||||| |||||||    
T  26332551 aaatcgttcaagtttatgatgtgttatgtttctaatgttggattattttcaaactctttcaatttaatttacgataatg 26332473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 15668575 - 15668468
Alignment:
Q  1 acattaatgaagattcgagttcatacaatttaagagtacaagatggtagctacatggatagagttagaaatcaaatagccactaagttgttggaaaacaa 100  Q
    |||||||||||||||| ||| |||| |||||||||||||||||||| ||||| |||||||||| ||||||| ||||||||||||||||||| ||||||||    
T  15668575 acattaatgaagattcaagtacatataatttaagagtacaagatgggagctatatggatagagctagaaattaaatagccactaagttgtttgaaaacaa 15668476  T
Q  101 aaatcgtt 108  Q
    ||||||||    
T  15668475 aaatcgtt 15668468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 13091722 - 13091900
Alignment:
Q  1 acattaatgaagattcgagttcatacaatttaagagtacaagatggtagctacatggatagagttagaaatcaaatagccactaagttgttggaaaacaa 100  Q
    ||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  13091722 acattaatgaagattcgagttcaaataatttaagagtacaagatgggagctacatggatagagctagaaatcgaatagccactaagttgttggaaaacaa 13091821  T
Q  101 aaatcgttcaagtttatgatgtgtcatgtttctaatgct-tattattttcaaactctttcaatttaatttatgataatg 178  Q
    |||||||||||||||||||||||| |||||||||||  |  ||||||||||||| ||||||||||||||||||||||||    
T  13091822 aaatcgttcaagtttatgatgtgttatgtttctaatattggattattttcaaacgctttcaatttaatttatgataatg 13091900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 44743655 - 44743833
Alignment:
Q  1 acattaatgaagattcgagttcatacaatttaagagtacaagatggtagctacatggatagagttagaaatcaaatagccactaagttgttggaaaacaa 100  Q
    ||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  44743655 acattaatgaagattcgagttcaaataatttaagagtacaagatgggagctacatggatagagctagaaatcgaatagccactaagttgttggaaaacaa 44743754  T
Q  101 aaatcgttcaagtttatgatgtgtcatgtttctaatgct-tattattttcaaactctttcaatttaatttatgataatg 178  Q
    |||||||||||||||||||||||| |||||||||||  |  ||||||| ||||| ||||||||||||||||||||||||    
T  44743755 aaatcgttcaagtttatgatgtgttatgtttctaatattggattatttccaaacgctttcaatttaatttatgataatg 44743833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 22591750 - 22591919
Alignment:
Q  8 tgaagattcgagttcatacaatttaagagtacaagatggtagctacatggatagagttagaaatcaaatagccactaagttgttggaaaacaaaaatcgt 107  Q
    ||||||||| |||||||| |||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||| |    
T  22591750 tgaagattcaagttcatataatttaagagtacaagatgggagccacatggatagagctagaaatcaaatagccactaagttgttggaaaacgaaaatcat 22591849  T
Q  108 tcaagtttatgatgtgtcatgtttctaatgct-tattattttcaaactctttcaatttaatttatgataa 176  Q
    |||||||||| |||||| |||||||||||  |  |||||||||| |||||||||||||||||||||||||    
T  22591850 tcaagtttataatgtgttatgtttctaatattggattattttcatactctttcaatttaatttatgataa 22591919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 13091625 - 13091714
Alignment:
Q  1 acattaatgaagattcgagttcatacaatttaagagtacaagatggtagctacatggatagagttagaaatcaaatagccactaagttgt 90  Q
    ||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||    
T  13091625 acattaatgaagattcgagttcaaataatttaagagtacaagatgggagctacatggatagagctagaaatcgaatagccactaagttgt 13091714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 23628382 - 23628428
Alignment:
Q  32 aagagtacaagatggtagctacatggatagagttagaaatcaaatag 78  Q
    |||||||||||||||  |||||||| |||||||||||||||||||||    
T  23628382 aagagtacaagatggaggctacatgaatagagttagaaatcaaatag 23628428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 24304332 - 24304286
Alignment:
Q  32 aagagtacaagatggtagctacatggatagagttagaaatcaaatag 78  Q
    |||||||||| ||||  |||||||| |||||||||||||||||||||    
T  24304332 aagagtacaaaatggaggctacatgaatagagttagaaatcaaatag 24304286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 10154563 - 10154600
Alignment:
Q  141 attattttcaaactctttcaatttaatttatgataatg 178  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  10154563 attatttccaaagtctttcaatttaatttatgataatg 10154600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 43 - 178
Target Start/End: Original strand, 36332072 - 36332208
Alignment:
Q  43 atggtagctacatggatagagttagaaatcaaatagccactaagttgttggaaaacaaaaatcgttcaagtttatgatgtgtcatgtttctaatgct-ta 141  Q
    |||| ||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |  |    
T  36332072 atgggagcaacatggatagagctagaaatcgaatagccactaagttgttggaaaacaaaaatcgttcaagtttatgatgtgttatgtttctaattttgga 36332171  T
Q  142 ttattttcaaactctttcaatttaatttatgataatg 178  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  36332172 ttatttccaaacgctttcaatttaatttatgataatg 36332208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 12997350 - 12997304
Alignment:
Q  32 aagagtacaagatggtagctacatggatagagttagaaatcaaatag 78  Q
    |||||||||||||||  |||||||| ||| |||||||||||||||||    
T  12997350 aagagtacaagatggaggctacatgaataaagttagaaatcaaatag 12997304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 55 - 178
Target Start/End: Original strand, 2887 - 3011
Alignment:
Q  55 tggatagagttagaaatcaaatagccactaagttgttggaaaacaaaaatcgttcaagtttatgatgtgtcatgtttctaatgct-tattattttcaaac 153  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |  |  ||||||| |||||    
T  2887 tggatagagctagaaatcaaatagtcactaagttgttggaaaacaaaaatcgttcaagtttatgatgtgttatgtttctagtattggattatttccaaac 2986  T
Q  154 tctttcaatttaatttatgataatg 178  Q
    |||||||||||||||||||||||||    
T  2987 tctttcaatttaatttatgataatg 3011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 43 - 178
Target Start/End: Original strand, 38835441 - 38835574
Alignment:
Q  43 atggtagctacatggatagagttagaaatcaaatagccactaagttgttggaaaacaaaaatcgttcaagtttatgatgtgtcatgtttctaatgcttat 142  Q
    |||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    |||    
T  38835441 atggaagctacatggacagagctagaaatcaaatagccactaagttgttggaaaacaaaaatcgttcaagtttatgatgtgttatgtttctaa----tat 38835536  T
Q  143 t--attttcaaactctttcaatttaatttatgataatg 178  Q
    |  |||  ||||| ||||||||||||||||||||||||    
T  38835537 tggattaccaaacgctttcaatttaatttatgataatg 38835574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 32605318 - 32605355
Alignment:
Q  141 attattttcaaactctttcaatttaatttatgataatg 178  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  32605318 attatttccaaactctttcaatttaatttatgataatg 32605355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 23730831 - 23730785
Alignment:
Q  32 aagagtacaagatggtagctacatggatagagttagaaatcaaatag 78  Q
    |||||||||||||||  |||||||| ||| |||||||||||||||||    
T  23730831 aagagtacaagatggaggctacatgaataaagttagaaatcaaatag 23730785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 45589176 - 45589222
Alignment:
Q  32 aagagtacaagatggtagctacatggatagagttagaaatcaaatag 78  Q
    |||||||||| ||||  |||||||| |||||||||||||||||||||    
T  45589176 aagagtacaaaatggaggctacatgaatagagttagaaatcaaatag 45589222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 10094999 - 10094926
Alignment:
Q  49 gctacatggatagagttagaaatcaaatagccactaagttgttggaaaacaaaaatcgttcaagtttatgatgt 122  Q
    ||||||| ||||||| || ||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  10094999 gctacattgatagaggtaaaaaccaaatagccattaagttgttggaaaacaaaaatcgttcaagtttgtgatgt 10094926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 103 - 178
Target Start/End: Complemental strand, 9789736 - 9789660
Alignment:
Q  103 atcgttcaagtttatgatgtgtcatgtttctaatgctt-attattttcaaactctttcaatttaatttatgataatg 178  Q
    |||||||||||||||||||||| |||||| || |  |  ||||||||||||||||||||||||||||||||||||||    
T  9789736 atcgttcaagtttatgatgtgttatgtttttagtattggattattttcaaactctttcaatttaatttatgataatg 9789660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 20481788 - 20481831
Alignment:
Q  35 agtacaagatggtagctacatggatagagttagaaatcaaatag 78  Q
    ||||||||||||  |||||||| |||||||||||||||||||||    
T  20481788 agtacaagatggaggctacatgaatagagttagaaatcaaatag 20481831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 10094330 - 10094293
Alignment:
Q  141 attattttcaaactctttcaatttaatttatgataatg 178  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  10094330 attattttcaaactccttcgatttaatttatgataatg 10094293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 24957145 - 24957210
Alignment:
Q  103 atcgttcaagtttatgatgtgtcatgtttctaatgct-tattattttcaaactctttcaatttaat 167  Q
    |||||||||||||||||||||| |||||||||||  |  ||||||| |||||||||||||||||||    
T  24957145 atcgttcaagtttatgatgtgttatgtttctaatattggattatttccaaactctttcaatttaat 24957210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 15588053 - 15588017
Alignment:
Q  141 attattttcaaactctttcaatttaatttatgataat 177  Q
    ||||||| |||||||||||||||||||||||||||||    
T  15588053 attatttccaaactctttcaatttaatttatgataat 15588017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 15309930 - 15309976
Alignment:
Q  32 aagagtacaagatggtagctacatggatagagttagaaatcaaatag 78  Q
    |||||||||||||||  |||||||| ||| |||||||||||||||||    
T  15309930 aagagtacaagatggaggctacatgaataaagttagaaatcaaatag 15309976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 15490299 - 15490345
Alignment:
Q  32 aagagtacaagatggtagctacatggatagagttagaaatcaaatag 78  Q
    |||||||||||||||  |||||||| ||| |||||||||||||||||    
T  15490299 aagagtacaagatggaggctacatgaataaagttagaaatcaaatag 15490345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 15772 - 15726
Alignment:
Q  32 aagagtacaagatggtagctacatggatagagttagaaatcaaatag 78  Q
    |||||||||||||||  |||||||| |||||||||||||||||||||    
T  15772 aagagtacaagatggaggctacatgaatagagttagaaatcaaatag 15726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 31958923 - 31958877
Alignment:
Q  32 aagagtacaagatggtagctacatggatagagttagaaatcaaatag 78  Q
    |||||||||||||||  |||||||| ||| |||||||||||||||||    
T  31958923 aagagtacaagatggaggctacatgaataaagttagaaatcaaatag 31958877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 34962498 - 34962531
Alignment:
Q  103 atcgttcaagtttatgatgtgtcatgtttctaat 136  Q
    |||||||||||||||||||||| |||||||||||    
T  34962498 atcgttcaagtttatgatgtgttatgtttctaat 34962531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 21022460 - 21022423
Alignment:
Q  141 attattttcaaactctttcaatttaatttatgataatg 178  Q
    ||||||| ||||||||||||||||||||||| ||||||    
T  21022460 attatttccaaactctttcaatttaatttataataatg 21022423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University