View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2329_low_1 (Length: 908)
Name: NF2329_low_1
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2329_low_1 |
 | |
|
| [»] scaffold0479 (2 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 805; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 805; E-Value: 0
Query Start/End: Original strand, 15 - 885
Target Start/End: Original strand, 33811001 - 33811867
Alignment:
| Q |
15 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcaccttagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
114 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811001 |
atcaagaaatttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
33811100 |
T |
|
| Q |
115 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811101 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaa |
33811200 |
T |
|
| Q |
215 |
gagaagatagagttttgtaaacaagctgcaggcctggcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttggttt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811201 |
gagaagatagagttttgtaaacaagctgcaggcttggcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttggttt |
33811300 |
T |
|
| Q |
315 |
ccagccacaatagtaacaataatgcatcaattggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaattctacca |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811301 |
ccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaattctacca |
33811400 |
T |
|
| Q |
415 |
tgtcagcaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcacacggtt |
514 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811401 |
tgtcagtaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcacacggtt |
33811500 |
T |
|
| Q |
515 |
caaaaccctctataaatagagaagagtttcagcaaagcataccacaccacaacataatcctcactcacatagagttgagagaaaaatagagagttcctca |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811501 |
caaaaccctctataaatagagaagagtttcagcaatg--aaacacaccacaacacaatcctcactcacatagagttgagagaaaaatagagagttcctca |
33811598 |
T |
|
| Q |
615 |
taagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattc |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811599 |
taagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattc |
33811698 |
T |
|
| Q |
715 |
ccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgcatc |
814 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33811699 |
ccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtg--tc |
33811796 |
T |
|
| Q |
815 |
attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca |
885 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33811797 |
attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
33811867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 805; E-Value: 0
Query Start/End: Original strand, 15 - 885
Target Start/End: Original strand, 33815919 - 33816785
Alignment:
| Q |
15 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcaccttagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
114 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33815919 |
atcaagaaatttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
33816018 |
T |
|
| Q |
115 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816019 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaa |
33816118 |
T |
|
| Q |
215 |
gagaagatagagttttgtaaacaagctgcaggcctggcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttggttt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816119 |
gagaagatagagttttgtaaacaagctgcaggcttggcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttggttt |
33816218 |
T |
|
| Q |
315 |
ccagccacaatagtaacaataatgcatcaattggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaattctacca |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816219 |
ccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaattctacca |
33816318 |
T |
|
| Q |
415 |
tgtcagcaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcacacggtt |
514 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816319 |
tgtcagtaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatgcacacggtt |
33816418 |
T |
|
| Q |
515 |
caaaaccctctataaatagagaagagtttcagcaaagcataccacaccacaacataatcctcactcacatagagttgagagaaaaatagagagttcctca |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816419 |
caaaaccctctataaatagagaagagtttcagcaatg--aaacacaccacaacacaatcctcactcacatagagttgagagaaaaatagagagttcctca |
33816516 |
T |
|
| Q |
615 |
taagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattc |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816517 |
taagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattc |
33816616 |
T |
|
| Q |
715 |
ccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgcatc |
814 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33816617 |
ccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtg--tc |
33816714 |
T |
|
| Q |
815 |
attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca |
885 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33816715 |
attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
33816785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 306 - 885
Target Start/End: Original strand, 33807638 - 33808213
Alignment:
| Q |
306 |
tgttggtttccagccacaatagtaacaataatgcatcaattggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807638 |
tgttggtttccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa |
33807737 |
T |
|
| Q |
406 |
attctaccatgtcagcaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg |
505 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807738 |
attctaccatgtcagtaacaaattgacaaacttggcaatgggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg |
33807837 |
T |
|
| Q |
506 |
cacacggttcaaaaccctctataaatagagaagagtttcagcaaagcataccacaccacaacataatcctcactcacatagagttgagagaaaaatagag |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807838 |
cacacggttcaaaaccctctataaatagagaagagtttcagcaatgaaa--cacaccacaacacaatcctcactcacatagagttgagagaaaaatagag |
33807935 |
T |
|
| Q |
606 |
agttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaaga |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807936 |
agttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaaga |
33808035 |
T |
|
| Q |
706 |
tttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttg |
805 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33808036 |
tttgtattcccattattattatagtggagatttaagaggcctacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttg |
33808135 |
T |
|
| Q |
806 |
ttgtgcatcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca |
885 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33808136 |
ttgtg--tcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
33808213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 707 - 802
Target Start/End: Original strand, 16698504 - 16698601
Alignment:
| Q |
707 |
ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt |
802 |
Q |
| |
|
||||||||||||||| ||||||||||| | ||||||||| | ||||||| | ||||||| || ||||||||||||||| ||||||| |||||||| |
|
|
| T |
16698504 |
ttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccataatttttccctttctcacattgagaaggatttccacactaaaatt |
16698601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 707 - 802
Target Start/End: Complemental strand, 22764002 - 22763905
Alignment:
| Q |
707 |
ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt |
802 |
Q |
| |
|
||||||||||||||| ||||||| | | |||||||||| | ||||||||||||||||| || |||| ||||||||||||||||| ||||||||| |
|
|
| T |
22764002 |
ttgtattcccattatcattatagcataagttttaagaggcccaatggtcccgtggtttttccctttctcatattgagaaggttttccatgctaaaatt |
22763905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 489 - 885
Target Start/End: Original strand, 50603003 - 50603403
Alignment:
| Q |
489 |
gaaccaagcatttaatgcacacggttcaaaaccctctataaatagagaagagtttcagcaaagcataccacaccacaacata-----atcctcactcaca |
583 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||||||||||||||||| |||||||||||| || ||||||||||||| ||||||||||||| |
|
|
| T |
50603003 |
gaaccaagcatttaatgcttacggttcatttctctctataaatagagaagagcttcagcaaagcaaac-acaccacaacatagcacaatcctcactcaca |
50603101 |
T |
|
| Q |
584 |
tagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgt--gagagttgtatctacaaattgagatacata |
681 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
50603102 |
cagagttgagagaaaaatagaaagttcctcataagagtg--agagaaaaatatagtgagccaatttgtatgagagttgtatctacaaattgagatatata |
50603199 |
T |
|
| Q |
682 |
gttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgag |
781 |
Q |
| |
|
|||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
50603200 |
gttaggtccatctaaaggtgaagatttgtattcccattattattatagtggagatttaagaggcctacgggttccgtggttttttcttactcacattgag |
50603299 |
T |
|
| Q |
782 |
aaggttttccacgctaaaattttgttgtgcatcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttccc |
881 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||| |||||||||| |||||||||||||||||||||| |||||| | |||||||||| |
|
|
| T |
50603300 |
aaggttttccacgctaaaattttattgtgtgtcattttacgttttcgctaaagtgtctattttgagttcacggaggagagaaattgtactggcatttccc |
50603399 |
T |
|
| Q |
882 |
aaca |
885 |
Q |
| |
|
|||| |
|
|
| T |
50603400 |
aaca |
50603403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 54968127 - 54967873
Alignment:
| Q |
16 |
tcaagaaagttatgttctctattgtgatagtcaaagtgcaattcaccttagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtat |
115 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| || |||||||| || |||||||| || |||||||| || || ||||||||||| |||||||||||| |
|
|
| T |
54968127 |
tcaagaaagttatgttctctattgcgacagtcagagcgcaattcatctcagcaagaactcaacataccactccagatcaaaacacattgatgtgaggtat |
54968028 |
T |
|
| Q |
116 |
cattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaag |
215 |
Q |
| |
|
|| |||||||||||||||||||| | |||| || || || |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54968027 |
cactggattcgtgatgtgttggaaagtaaattgttgaaagtagagaaagttcacaccaatgagaacggagcagatatgatgacaaaagctctaccaaaag |
54967928 |
T |
|
| Q |
216 |
agaagatagagttttgtaaacaagctgcaggcctggcagcaaccccaaactaatc |
270 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||||||||||||||| ||||| |
|
|
| T |
54967927 |
agaagatagagttttgcaaacaagctgctggattggcagcaaccccaaattaatc |
54967873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 635 - 893
Target Start/End: Complemental strand, 54967477 - 54967202
Alignment:
| Q |
635 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
728 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
54967477 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
54967378 |
T |
|
| Q |
729 |
gtggagattt--aagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaattttgtt-gtg-catca-------- |
815 |
Q |
| |
|
||||| ||| ||||||| | |||||||||||||||||| || |||| ||||||||||||||||||||||||||| | || ||| ||| | |
|
|
| T |
54967377 |
gtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaaggttttccacgctaaaattctctttgtgtcattacgctttta |
54967278 |
T |
|
| Q |
816 |
ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaacatcatttga |
893 |
Q |
| |
|
||| |||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
54967277 |
tttcacgtttccgcta--gtgcctattttgagttgacggaggagggaaattatgcaggcatttcccaacatgatttga |
54967202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 688 - 886
Target Start/End: Complemental strand, 44782733 - 44782523
Alignment:
| Q |
688 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa |
783 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||| | |||||||||||||||| |||| |||| |||||||| |
|
|
| T |
44782733 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtggttttttccctttctcatattgagaa |
44782634 |
T |
|
| Q |
784 |
ggttttccacgctaaaatt-ttgttgtg-cat--------cattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcagg |
873 |
Q |
| |
|
||||||||||||||||||| | ||||| ||| |||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44782633 |
ggttttccacgctaaaattctctttgtgtcattacgtttatatttcacgtttccgct--agtgtctattttgagttcacggaggagggaaattatgcagg |
44782536 |
T |
|
| Q |
874 |
catttcccaacat |
886 |
Q |
| |
|
||||||||||||| |
|
|
| T |
44782535 |
catttcccaacat |
44782523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 635 - 802
Target Start/End: Original strand, 39298736 - 39298908
Alignment:
| Q |
635 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
728 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||| | ||| ||||| ||||||| ||||||||| | |||||||||| |||| |||||| |
|
|
| T |
39298736 |
atagtgagccaatttgtgagagt-gtccttacaaattgagagatatattgtagttagatccacctaagggtgaagttgttgtattccctttatcattata |
39298834 |
T |
|
| Q |
729 |
gtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt |
802 |
Q |
| |
|
||||| |||||||||| | |||||||||| ||||||||| |||||||||||||||||| ||| |||||||| |
|
|
| T |
39298835 |
gtggaagtttaagaggcacaagggtcccgtgatttttccttcatcacattgagaaggtttttcacactaaaatt |
39298908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 688 - 804
Target Start/End: Complemental strand, 18556511 - 18556392
Alignment:
| Q |
688 |
tccacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaag |
784 |
Q |
| |
|
||||||| ||||||||| | |||||||| |||| | ||||||||||| ||||||||||| |||||||||||||||| |||| |||| ||||||||| |
|
|
| T |
18556511 |
tccacctaagggtgaagttgttgtattctcattgtcattatagtggaagtttaagaggctcgagggtcccgtggttttttgcctttctcagattgagaag |
18556412 |
T |
|
| Q |
785 |
gttttccacgctaaaatttt |
804 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
18556411 |
gttttccacgctaaaatttt |
18556392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 629 - 733
Target Start/End: Complemental strand, 31725448 - 31725346
Alignment:
| Q |
629 |
aaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattata |
728 |
Q |
| |
|
||||||||||| | |||||||||||| |||| |||||||||||||||||| || |||||||||| || |||||||||||||||| ||||||| ||||| |
|
|
| T |
31725448 |
aaaaatatagttaatcaatttgtgagaattgt--ctacaaattgagatacatcgtaaggtccacctaagtgtgaagatttgtattctcattattgttata |
31725351 |
T |
|
| Q |
729 |
gtgga |
733 |
Q |
| |
|
|||| |
|
|
| T |
31725350 |
ttgga |
31725346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 688 - 802
Target Start/End: Complemental strand, 54980051 - 54979933
Alignment:
| Q |
688 |
tccacctgagggtgaagat-ttgtattcccattattattatagtggagattt--aagaggcttacgggtcccgtggtttttcc-ttactcacattgagaa |
783 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| ||| ||||||| | |||||||||||||||||| || |||| |||||||| |
|
|
| T |
54980051 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagtttttaagaggcccaagggtcccgtggtttttccctttctcatattgagaa |
54979952 |
T |
|
| Q |
784 |
ggttttccacgctaaaatt |
802 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
54979951 |
ggttttccatgctaaaatt |
54979933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 707 - 806
Target Start/End: Original strand, 17645800 - 17645897
Alignment:
| Q |
707 |
ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgt |
806 |
Q |
| |
|
||||||| |||||| ||||||||||| ||||||| ||| | | |||||||||||||| || | | ||||||||||||||||||||||||||||||| |
|
|
| T |
17645800 |
ttgtattgtcattatcattatagtggaagtttaagacgctcaagagtcccgtggttttttttt--ttatattgagaaggttttccacgctaaaattttgt |
17645897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 815 - 873
Target Start/End: Complemental strand, 54979910 - 54979854
Alignment:
| Q |
815 |
attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcagg |
873 |
Q |
| |
|
|||| |||||||||||| |||| ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
54979910 |
atttcacgtttccgcta--gtgcttattttgagttgacggaggagggaaattatgcagg |
54979854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 833 - 885
Target Start/End: Original strand, 17645928 - 17645981
Alignment:
| Q |
833 |
agtgcctattttgagttcacggaggagggaaattaagcagg-catttcccaaca |
885 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||| | ||| |||||||||||| |
|
|
| T |
17645928 |
agtgtctattttgagttcacggatgagggaaattatggaggtcatttcccaaca |
17645981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 233; Significance: 1e-128; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 511 - 885
Target Start/End: Complemental strand, 31152298 - 31151926
Alignment:
| Q |
511 |
ggttcaaaaccctctataaatagagaagagtttcagcaaagcataccacaccacaacataatcctcactcacatagagttgagagaaaaatagagagttc |
610 |
Q |
| |
|
|||||||| | ||||||||||||||||||| |||||||||||| | |||||||||||| || | || || ||||||||||||||||||||||||| |
|
|
| T |
31152298 |
ggttcaaatctctctataaatagagaagagcttcagcaaagca-atcacaccacaacacaa--cacaatcctcgggagttgagagaaaaatagagagttc |
31152202 |
T |
|
| Q |
611 |
ctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagatttgt |
710 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
31152201 |
ctcgtaagagtgtgagagaaaaatatagtaagccaatttgtgagagttgtatctataaatttagatacgtagttaggtccatctgagggtgaagatttgt |
31152102 |
T |
|
| Q |
711 |
attcccattattattatagtggagatttaagaggcttacgggtcccgtggt-ttttccttactcacattgagaaggttttccacgctaaaattttgttgt |
809 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31152101 |
attcccattattattatagtggagatttaagaggcctacggatcccgtggtttttttcttactcacattgagaaggttttccacattaaaattttgttgt |
31152002 |
T |
|
| Q |
810 |
gcatcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca |
885 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
31152001 |
gtgtcattttatgtttccgctaaagtgcctattttgagttcagagaggagggaaattatgcaggcatttcccaaca |
31151926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 22982057 - 22981829
Alignment:
| Q |
15 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcaccttagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
114 |
Q |
| |
|
||||| |||| |||||||||||||| || ||||| ||||| ||||| || |||||||| ||||||||||| || || || |||||||| || |||||||| |
|
|
| T |
22982057 |
atcaaaaaagctatgttctctattgcgacagtcagagtgcgattcatctcagcaagaactcgacataccactctagatcgaaacacattgacgtgaggta |
22981958 |
T |
|
| Q |
115 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaa |
214 |
Q |
| |
|
|| || ||| |||||||||||||| |||| || || || |||||||| ||||||||||||| || |||||||| |||||||||||| ||||||||||| |
|
|
| T |
22981957 |
ccactgtattaatgatgtgttggagagtaaattgttgaaagtagagaaagttcacaccaatgagaatggagcagacatgatgacaaaacctctaccaaaa |
22981858 |
T |
|
| Q |
215 |
gagaagatagagttttgtaaacaagctgc |
243 |
Q |
| |
|
|| ||||| |||||||| ||||||||||| |
|
|
| T |
22981857 |
gaaaagattgagttttgcaaacaagctgc |
22981829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 23806351 - 23806579
Alignment:
| Q |
15 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcaccttagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
114 |
Q |
| |
|
||||| |||| |||||||||||||| || ||||| ||||| ||||| || |||||||| ||||||||||| || || || |||||||| || |||||||| |
|
|
| T |
23806351 |
atcaaaaaagctatgttctctattgcgacagtcagagtgcgattcatctcagcaagaactcgacataccactctagatcgaaacacattgacgtgaggta |
23806450 |
T |
|
| Q |
115 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaa |
214 |
Q |
| |
|
|| || ||| |||||||||||||| |||| || || || |||||||| ||||||||||||| || |||||||| |||||||||||| ||||||||||| |
|
|
| T |
23806451 |
ccactgtattaatgatgtgttggagagtaaattgttgaaagtagagaaagttcacaccaatgagaatggagcagacatgatgacaaaacctctaccaaaa |
23806550 |
T |
|
| Q |
215 |
gagaagatagagttttgtaaacaagctgc |
243 |
Q |
| |
|
|| ||||| |||||||| ||||||||||| |
|
|
| T |
23806551 |
gaaaagattgagttttgcaaacaagctgc |
23806579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 688 - 885
Target Start/End: Original strand, 22981504 - 22981710
Alignment:
| Q |
688 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag |
784 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| | |||||||||| | |||||||||||||||||| || |||||||||||||| |
|
|
| T |
22981504 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag |
22981603 |
T |
|
| Q |
785 |
gttttccacgctaaaattttgt-tgt------gcatcatttt-acgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcat |
876 |
Q |
| |
|
|||||||||||||||||| | | ||| || | |||| ||||||||||| ||||||| ||||||||||||||||| ||||||||| |||| ||| |
|
|
| T |
22981604 |
gttttccacgctaaaattctctgtgtcattacgcttatttttcacgtttccgct--agtgcctgttttgagttcacggaggggggaaattatgcagtcat |
22981701 |
T |
|
| Q |
877 |
ttcccaaca |
885 |
Q |
| |
|
||||||||| |
|
|
| T |
22981702 |
ttcccaaca |
22981710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 688 - 885
Target Start/End: Complemental strand, 23806904 - 23806698
Alignment:
| Q |
688 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag |
784 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| | |||||||||| | |||||||||||||||||| || |||||||||||||| |
|
|
| T |
23806904 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaag |
23806805 |
T |
|
| Q |
785 |
gttttccacgctaaaattttgt-tgt------gcatcatttt-acgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcat |
876 |
Q |
| |
|
|||||||||||||||||| | | ||| || | |||| ||||||||||| ||||||| ||||||||||||||||| ||||||||| |||| ||| |
|
|
| T |
23806804 |
gttttccacgctaaaattctctgtgtcattacgcttatttttcacgtttccgct--agtgcctgttttgagttcacggaggggggaaattatgcagtcat |
23806707 |
T |
|
| Q |
877 |
ttcccaaca |
885 |
Q |
| |
|
||||||||| |
|
|
| T |
23806706 |
ttcccaaca |
23806698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 626 - 809
Target Start/End: Complemental strand, 1111564 - 1111378
Alignment:
| Q |
626 |
gagaaaaatatagtgagccaatttgtgagagttgtatcta--caaattgagatacatagttaggtccacctgagggtgaagatttgtattcccattatta |
723 |
Q |
| |
|
|||||||||||| || ||||||||||||| | |||||| ||||||||||||||||||||||| || | |||||||| ||||||||| |||||||| |
|
|
| T |
1111564 |
gagaaaaatataaggaaccaatttgtgagaaatatatctatacaaattgagatacatagttaggtttacgtaagggtgaaagtttgtattctcattatta |
1111465 |
T |
|
| Q |
724 |
ttatagtgg-agatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgt |
809 |
Q |
| |
|
|||| | | ||||||||||| |||| | ||||| || |||||||||| | ||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
1111464 |
ttattatagtagatttaagagacttatgagtcccatgatttttccttatttacattcagaaggttttctacactaaaattttgttgt |
1111378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 198 - 311
Target Start/End: Complemental strand, 1105101 - 1104988
Alignment:
| Q |
198 |
caaaagctctaccaaaagagaagatagagttttgtaaacaagctgcaggcctggcagcaaccccaaactaatctaaggatagtttccctttggctggagg |
297 |
Q |
| |
|
||||||||||||||||| ||||| |||| |||| |||| | ||||||| || |||||| |||||| ||||||||| ||||||| | ||| ||| |||| |
|
|
| T |
1105101 |
caaaagctctaccaaaaaagaagttagatttttataaagcaattgcaggcttgacagcaatcccaaattaatctaagtatagttttcgtttagctagagg |
1105002 |
T |
|
| Q |
298 |
gggagaattgttgg |
311 |
Q |
| |
|
| || ||||||||| |
|
|
| T |
1105001 |
gagataattgttgg |
1104988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 1105201 - 1105112
Alignment:
| Q |
77 |
acataccattcaaggtcaaaacacatcgatgtgaggtatcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaatt |
166 |
Q |
| |
|
|||||||||| ||| |||||||||||| |||| || ||||||| || | ||| ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
1105201 |
acataccatttaagatcaaaacacatcaatgtaagaaatcattgaatacatgacgtgttagagaataaactgctttaaatagagaaaatt |
1105112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 308
Target Start/End: Complemental strand, 4836462 - 4836172
Alignment:
| Q |
15 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcaccttagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4836462 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
4836363 |
T |
|
| Q |
115 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaa |
214 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||||||||||| | ||||| ||| |
|
|
| T |
4836362 |
tcattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaattcacacaaatgagaatggagcagacatgatgacaaaaccgctaccgaaa |
4836263 |
T |
|
| Q |
215 |
gagaagatagagttttgtaaacaagctgcaggcctggcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgt |
308 |
Q |
| |
|
||||||||||||||||| ||||||||||| || ||| ||||||||||||||||| ||||| || |||| ||||||||||||||||||||| |
|
|
| T |
4836262 |
gagaagatagagttttgcaaacaagctgctggaatggtagcaaccccaaactaat-taagg--cattcccctatggctggagggggagaattgt |
4836172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 92 - 270
Target Start/End: Complemental strand, 24380105 - 24379927
Alignment:
| Q |
92 |
tcaaaacacatcgatgtgaggtatcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagata |
191 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||| |||| || || || |||||||| ||||||||||| | || ||||| || | |
|
|
| T |
24380105 |
tcaaaacacaatgatgtgaggtatcactggattcgtgatgtgttggagagtaaattgttgaaagtagagaaagttcacaccaataagaatggagccgaca |
24380006 |
T |
|
| Q |
192 |
tgatgacaaaagctctaccaaaagagaagatagagttttgtaaacaagctgcaggcctggcagcaaccccaaactaatc |
270 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||| |
|
|
| T |
24380005 |
tgatgacaaaacctctatcaaaagagaagatagagttttgcaaacaagctgctggattggcagcaaccccaaactaatc |
24379927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 635 - 886
Target Start/End: Complemental strand, 25857395 - 25857130
Alignment:
| Q |
635 |
atagtgagccaatttgtgagagttgtatctacaaatt--gagatacat---agttaggtccacctgagggtgaagat-ttgtattcccattattattata |
728 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| |||||| || ||| || ||||||| | ||||||| | ||||||||||||||| |||||| |
|
|
| T |
25857395 |
atagtgagccaatttgtgagagtgttccttacaaattaagagatatattgtagtgagatccacctaaaggtgaagttgttgtattcccattatcattata |
25857296 |
T |
|
| Q |
729 |
gtgga-gatttaagaggcttacgggtcccgtggtttttcctta-ctcacattgagaaggttttccacgctaaaattttgt-tgt------gcat-cattt |
818 |
Q |
| |
|
||||| | |||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||| | | ||| || | |||| |
|
|
| T |
25857295 |
gtggaagttttaagaggcccaagggtcccgtggtttttccttttctcacattgagaaggttttccacgctaaaattctctgtgtcattacgcttatattt |
25857196 |
T |
|
| Q |
819 |
tacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaacat |
886 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25857195 |
cacgtttccgct--agtgcctattttaagttcacggaggagggaaattatgcaggcatttcccaacat |
25857130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 688 - 885
Target Start/End: Complemental strand, 4842857 - 4842648
Alignment:
| Q |
688 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa |
783 |
Q |
| |
|
||||||| ||||||||| | ||||||||| ||||| ||||||||||| | |||||||||| | |||||| ||||||||| |||| ||||||||||||| |
|
|
| T |
4842857 |
tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaagggtcctgtggttttttccctttctcacattgagaa |
4842758 |
T |
|
| Q |
784 |
ggttttccacgctaaaattttgtt-gtg-catca--------ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcagg |
873 |
Q |
| |
|
||||||||||||||||||| | || ||| ||| | ||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4842757 |
ggttttccacgctaaaattctctttgtgtcattacacttatatttcacgtttccgcta--gtgcctattttgagttcacggaggagggaaattatgcagg |
4842660 |
T |
|
| Q |
874 |
catttcccaaca |
885 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4842659 |
catttcccaaca |
4842648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 635 - 885
Target Start/End: Complemental strand, 4835840 - 4835575
Alignment:
| Q |
635 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
728 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||| ||||||||||| |||||| |
|
|
| T |
4835840 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgcattcccattatcattata |
4835741 |
T |
|
| Q |
729 |
gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgt-tgtgcat--------cat |
816 |
Q |
| |
|
||||| | |||||||||| | |||||||||||||||| |||| |||||||||||||||||||||||||||||||| | | ||| ||| || |
|
|
| T |
4835740 |
gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaaggttttccacgctaaaattctctgtgt-cattacgtttatat |
4835642 |
T |
|
| Q |
817 |
tttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca |
885 |
Q |
| |
|
|| |||||||| || ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
4835641 |
ttcacgtttccact--agtgcctattttgagttcatggaggagggaaattatgcaggcatttcccaaca |
4835575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 688 - 804
Target Start/End: Complemental strand, 13465165 - 13465046
Alignment:
| Q |
688 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag |
784 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||| ||||||||||| | |||||||||| | |||||| ||||||||||| || |||||||||||||| |
|
|
| T |
13465165 |
tccacctgagggtgaacttgttgtattcccattatcattatagtggatgttttaagaggcccaagggtcctgtggtttttccctttctcacattgagaag |
13465066 |
T |
|
| Q |
785 |
gttttccacgctaaaatttt |
804 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
13465065 |
gttttccacgctaaaatttt |
13465046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 625 - 794
Target Start/End: Complemental strand, 8252853 - 8252686
Alignment:
| Q |
625 |
agagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagataca----tagttaggtccacctgagggtgaagatttgtattcccatta |
720 |
Q |
| |
|
|||||||||||||||||| |||||| ||| ||||||||||||||||||||||||| || ||| ||||| || | | ||||| ||||||||||| ||| |
|
|
| T |
8252853 |
agagaaaaatatagtgagtcaatttatgatagttgtatctacaaattgagatacataattaattaagtccatctaaagatgaagctttgtattcccgtta |
8252754 |
T |
|
| Q |
721 |
ttattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacg |
794 |
Q |
| |
|
|||||| | || || ||||||| |||||| |||||| | |||||||||| |||||||||||||||||| |
|
|
| T |
8252753 |
ttattacattgaggagttaagagacttacgagtcccg------taccttactcacgttgagaaggttttccacg |
8252686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 707 - 802
Target Start/End: Complemental strand, 27341120 - 27341025
Alignment:
| Q |
707 |
ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatt |
802 |
Q |
| |
|
||||||| ||||||| ||| |||| || ||||||||| | |||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
27341120 |
ttgtatttccattatcattgtagtagaagtttaagaggtacaagggtcccgtggtttttcctttcttacattgagaaggttttccacgctaaaatt |
27341025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 690 - 802
Target Start/End: Original strand, 17845847 - 17845960
Alignment:
| Q |
690 |
cacctgagggtgaagat-ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttt |
788 |
Q |
| |
|
||||| ||||||||| | ||||||| ||||||| ||||||||||| ||||||||| | ||||| ||||||||||||| ||||||||| |||||||| |
|
|
| T |
17845847 |
cacctaagggtgaagttgttgtatttccattatcattatagtggaagtttaagaggtccaaaggtcctgtggtttttccttcctcacattgggaaggttt |
17845946 |
T |
|
| Q |
789 |
tccacgctaaaatt |
802 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
17845947 |
tccactctaaaatt |
17845960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 688 - 802
Target Start/End: Complemental strand, 24379487 - 24379370
Alignment:
| Q |
688 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaag |
784 |
Q |
| |
|
||||||| ||||||||| | ||||||||| ||||| ||||||||||| | |||||||||| | | ||||||||||||||| || |||||||||||||| |
|
|
| T |
24379487 |
tccacctaagggtgaagttgttgtattcctattatcattatagtggaagttttaagaggcccaaagatcccgtggtttttccctttctcacattgagaag |
24379388 |
T |
|
| Q |
785 |
gttttccacgctaaaatt |
802 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
24379387 |
gttttccacgttaaaatt |
24379370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 835 - 885
Target Start/End: Original strand, 24380113 - 24380163
Alignment:
| Q |
835 |
tgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca |
885 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
24380113 |
tgcctattttgagttcacagaggagggaaattatgcaggcatttcccaaca |
24380163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 736 - 802
Target Start/End: Complemental strand, 38994218 - 38994151
Alignment:
| Q |
736 |
tttaagaggcttacgggtcccgtggtttttcc-ttactcacattgagaaggttttccacgctaaaatt |
802 |
Q |
| |
|
||||||||||| |||||||||||||||||| || ||| |||||||||||||||||||| ||||||| |
|
|
| T |
38994218 |
tttaagaggctcgagggtcccgtggtttttccctttctcgcattgagaaggttttccacgttaaaatt |
38994151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 815 - 885
Target Start/End: Complemental strand, 24379347 - 24379279
Alignment:
| Q |
815 |
attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca |
885 |
Q |
| |
|
||||||||||||| ||| ||||||||||| |||||||||||||| ||||||| | || ||||| |||||| |
|
|
| T |
24379347 |
attttacgtttccacta--gtgcctattttaagttcacggaggagagaaattatgtagacattttccaaca |
24379279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 128; Significance: 1e-65; HSPs: 2)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 2019 - 2274
Alignment:
| Q |
15 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcaccttagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
114 |
Q |
| |
|
|||||||||| |||||||||||||| || |||||||| || ||||| || |||||||| || ||||| || || || |||||||| || ||||||||||| |
|
|
| T |
2019 |
atcaagaaagctatgttctctattgcgacagtcaaagcgcgattcatctcagcaagaactcaacatatcactccagatcaaaacatattgatgtgaggta |
2118 |
T |
|
| Q |
115 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaa |
214 |
Q |
| |
|
||| |||||||||||||||||||||| |||| || || || |||||||| ||||||||||||| || |||||||| |||||||| ||| ||||||||||| |
|
|
| T |
2119 |
tcactggattcgtgatgtgttggagagtaaattgttgaaagtagagaaagttcacaccaatgagaatggagcagacatgatgaccaaacctctaccaaaa |
2218 |
T |
|
| Q |
215 |
gagaagatagagttttgtaaacaagctgcaggcctggcagcaaccccaaactaatc |
270 |
Q |
| |
|
|||||||| |||||||| ||||||||||| || |||||||||||||||||||||| |
|
|
| T |
2219 |
gagaagattgagttttgcaaacaagctgctggattggcagcaaccccaaactaatc |
2274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 688 - 886
Target Start/End: Original strand, 2727 - 2937
Alignment:
| Q |
688 |
tccacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaa |
783 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||| ||||||||||| | |||||||||| | |||||||||||||||| |||| ||||||||||||| |
|
|
| T |
2727 |
tccacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggcccaagggtcccgtggttttttccctttctcacattgagaa |
2826 |
T |
|
| Q |
784 |
ggttttccacgctaaaatt-ttgttgtg-cat--------cattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcagg |
873 |
Q |
| |
|
||||||||||||||||||| | ||||| ||| |||| ||||||||||| |||| ||||||||||||||||||| |||||||||| ||| | |
|
|
| T |
2827 |
ggttttccacgctaaaattctctttgtgtcattacgcttatatttcacgtttccgct--agtgtctattttgagttcacggagaagggaaattatgcatg |
2924 |
T |
|
| Q |
874 |
catttcccaacat |
886 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2925 |
catttcccaacat |
2937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 4e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 670 - 885
Target Start/End: Complemental strand, 29707069 - 29706854
Alignment:
| Q |
670 |
ttgagatacatagttaggtccacctgagggtgaagatttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttcctt |
769 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| | | |||||||||||||||||||||||||||||| || | |||||||| || |||||| |
|
|
| T |
29707069 |
ttgagatacatagttaggtccacccgagggtgaagattttttattccattattattatagtggagatttaagaggtctatgagtcccgtgattgttcctt |
29706970 |
T |
|
| Q |
770 |
actcacattgagaaggttttccacgctaaaattttgttgtgcatcattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaag |
869 |
Q |
| |
|
||||| |||||||||||||||| | |||||||||||||||| ||||||||| ||| |||||||||| |||||| |||||||||| ||| ||||||| | |
|
|
| T |
29706969 |
actcatattgagaaggttttcctcactaaaattttgttgtgtgtcattttacatttttgctaaagtgcatattttaagttcacggatgagagaaattatg |
29706870 |
T |
|
| Q |
870 |
caggcatttcccaaca |
885 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
29706869 |
gaggcattttccaaca |
29706854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 710 - 802
Target Start/End: Original strand, 27642132 - 27642225
Alignment:
| Q |
710 |
tattcccattattattatagtggagatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaaggttttccacgctaaaatt |
802 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | || |||||| ||||| |||| ||||||||||||||||||| ||||| |||||| |
|
|
| T |
27642132 |
tattcccattattattatagtggaagtttaagagacccgaggaccccgtgattttttcctttctcacattgagaaggttttacacgccaaaatt |
27642225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 635 - 867
Target Start/End: Complemental strand, 26752 - 26516
Alignment:
| Q |
635 |
atagtgagccaatttgtgagagttgtatctacaaattgagataca-----tagttaggtccacctgagggtgaag-atttgtattcccattattattata |
728 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | | |||| || ||||||| |||||| || | |||||||| | |||| |||| | |
|
|
| T |
26752 |
atagtgagccaatttgtgagagtgttccttacaaattgagagataaattgtagtgagatccacctaagggtggagtagttgtattctcgttatcattaga |
26653 |
T |
|
| Q |
729 |
gtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaattttgttgtgcatcattttacgtttccg |
828 |
Q |
| |
|
||||| |||||||||| | ||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||| | ||||||||||| || |
|
|
| T |
26652 |
gtggaagtttaagaggcccaagggtcccgtagtttttccttactcacattgaaaaggttttccaccctaaaattttgttgtg--ttattttacgttttcg |
26555 |
T |
|
| Q |
829 |
ctaaagtgcctattttgagttcacggaggagggaaatta |
867 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
26554 |
ctaaagtgtctattttgagttcacgaaggagggagatta |
26516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 1e-31; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 635 - 885
Target Start/End: Original strand, 41481548 - 41481815
Alignment:
| Q |
635 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
728 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
41481548 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattgtagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
41481647 |
T |
|
| Q |
729 |
gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaatt-ttgttgtg-cat--------ca |
815 |
Q |
| |
|
||||| | |||||||||| | |||||||||||||||| |||| |||| ||||||||||||||||||||||||||| | ||||| ||| | |
|
|
| T |
41481648 |
gtggaagttttaagaggcccaagggtcccgtggttttttccctttctcatattgagaaggttttccacgctaaaattctctttgtgtcattacgtttata |
41481747 |
T |
|
| Q |
816 |
ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca |
885 |
Q |
| |
|
||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41481748 |
tttcacgtttccgct--agtgtctattttgagttcacggaggagggaaattatgcaggcatttcccaaca |
41481815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 635 - 886
Target Start/End: Original strand, 36167547 - 36167814
Alignment:
| Q |
635 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
728 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
36167547 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
36167646 |
T |
|
| Q |
729 |
gtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggttttccacgctaaaattttgtt-gtg-catca-------- |
815 |
Q |
| |
|
||||| | |||||||||| | |||||| ||||||||| |||| |||| ||||||||||||||||||||||||||| | || ||| ||| | |
|
|
| T |
36167647 |
gtggaagttttaagaggcccaagggtcc-gtggttttttccctttctcatattgagaaggttttccacgctaaaattctctttgtgtcattacgtttata |
36167745 |
T |
|
| Q |
816 |
ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaacat |
886 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36167746 |
tttcacgtttccgcta--gtgcctattttgagttcacggaggagggaaattatgcaggcatttcccaacat |
36167814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 691 - 880
Target Start/End: Complemental strand, 18951326 - 18951129
Alignment:
| Q |
691 |
acctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttttt--ccttactcacattgagaaggt |
786 |
Q |
| |
|
|||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||| || | |||| |||||||||| |||| |||||||||||||||| |
|
|
| T |
18951326 |
acctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaagcccaaaggtctcgtggttttttccctttctcacattgagaaggt |
18951227 |
T |
|
| Q |
787 |
tttccacgctaaaattttg-----ttgtgcat-cattttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcc |
880 |
Q |
| |
|
|||||| ||||||||| || || || | |||| | ||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
18951226 |
tttccatgctaaaattctgtgtcattacgcttatatttcatgtttccgct--agtgcctattttgagttcacggaggaggcaaattatgcaggcatttcc |
18951129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 282 - 311
Target Start/End: Original strand, 12935055 - 12935084
Alignment:
| Q |
282 |
tccctttggctggagggggagaattgttgg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
12935055 |
tccctttggctggagggggagaattgttgg |
12935084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 4e-28; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 635 - 885
Target Start/End: Complemental strand, 9757480 - 9757212
Alignment:
| Q |
635 |
atagtgagccaatttgtgagagttgtatctacaaattgagatacata-----gttaggtccacctgagggtgaagat-ttgtattcccattattattata |
728 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| | ||| || || ||||||| ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
9757480 |
atagtgagccaatttgtgagagtgttccttacaaattgagagatatattatagtgagatccacctaagggtgaagttgttgtattcccattatcattata |
9757381 |
T |
|
| Q |
729 |
gtgga---gatttaagaggcttacgggtcccgtggttttt-ccttactcacattgagaaggttttccacgctaaaatt-ttgttgtg-cat--------c |
814 |
Q |
| |
|
||||| |||||||||| | |||||||||||||||| |||| |||||||||||||||||||||||||||||||| | ||||| ||| |
|
|
| T |
9757380 |
gtggaagttttttaagaggcccaagggtcccgtggtttttccctttctcacattgagaaggttttccacgctaaaattctctttgtgtcattacgcttat |
9757281 |
T |
|
| Q |
815 |
attttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca |
885 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| |||||| |
|
|
| T |
9757280 |
atttcacgtttccgct--agtgcctattttgagttcacggaggaaggaaattatgcaggcatttaccaaca |
9757212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 15 - 311
Target Start/End: Complemental strand, 25003727 - 25003452
Alignment:
| Q |
15 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcaccttagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
114 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||||||| || || || |||||||| || |||||||| |||||||| ||||||||||| |
|
|
| T |
25003727 |
atcaacaaagttatgttccctattgtgatagtcaaagtgcaattcacctcagaaataactcgacata-caatcaaggtc-aaacacatagatgtgaggta |
25003630 |
T |
|
| Q |
115 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaa |
214 |
Q |
| |
|
|| |||||||||| ||||| | ||| ||||||| |||||||| ||||| ||||||| || || |||||||||||||| |||||||||| |
|
|
| T |
25003629 |
--at-------gtgatgtgttagagaa-agactactgcaaaaagagaaaa---acaccgatgacaaagggacaaatatgatgacaaaaactctaccaaat |
25003543 |
T |
|
| Q |
215 |
gagaagatagagttttgtaaacaagctgcaggcctggcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttgg |
311 |
Q |
| |
|
|| | || |||||||| || || | || |||||||||||||||||| | | |||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
25003542 |
ga------aaaggtttgtaaagaatatgaaagctatacagcaaccccaaactaatttgaagatattttccctttggctggagggagagaattgttgg |
25003452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 707 - 804
Target Start/End: Complemental strand, 37287069 - 37286972
Alignment:
| Q |
707 |
ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaatttt |
804 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
37287069 |
ttgtattcttattattattatagtggaagtttaagatgcttaagggtcccgtgatttttcctttttcacattgagaaggttttccatgctaaaatttt |
37286972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 690 - 802
Target Start/End: Complemental strand, 42683038 - 42682924
Alignment:
| Q |
690 |
cacctgagggtgaagat-ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggtt |
787 |
Q |
| |
|
||||| ||||||||| | ||||||||||||||| ||||||||||| | ||||||||| | |||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
42683038 |
cacctaagggtgaagttgttgtattcccattatcattatagtggaagttttaagaggtccaagggtcccgtgatttttcctttctcacattgagaaggtt |
42682939 |
T |
|
| Q |
788 |
ttccacgctaaaatt |
802 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
42682938 |
ttccacgctgaaatt |
42682924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 282 - 312
Target Start/End: Original strand, 14178325 - 14178355
Alignment:
| Q |
282 |
tccctttggctggagggggagaattgttggt |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
14178325 |
tccctttggctggagggggagaattgttggt |
14178355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 282 - 311
Target Start/End: Complemental strand, 28607548 - 28607519
Alignment:
| Q |
282 |
tccctttggctggagggggagaattgttgg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28607548 |
tccctttggctggagggggagaattgttgg |
28607519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 707 - 885
Target Start/End: Complemental strand, 342404 - 342217
Alignment:
| Q |
707 |
ttgtattcccattattattatagtgga-gatttaagaggcttacgggtcccgtggttt-ttcc-ttactcacattgagaaggttttccacgctaaaattt |
803 |
Q |
| |
|
||||||||||||||| ||||||||||| | |||||||||| | || ||||||||||| |||| || |||| |||||||||||||| |||||||||||| |
|
|
| T |
342404 |
ttgtattcccattatcattatagtggaagttttaagaggcccaaggatcccgtggtttcttccatttctcatattgagaaggtttttcacgctaaaattc |
342305 |
T |
|
| Q |
804 |
tgttgtg-catca--------ttttacgtttccgctaaagtgcctattttgagttcacggaggagggaaattaagcaggcatttcccaaca |
885 |
Q |
| |
|
| ||||| ||| | ||| ||||||| |||| ||||||||||||||||||||||||||| |||||| |||||||||| |||||| |
|
|
| T |
342304 |
t-ttgtgtcattacgcttatatttcacgtttctgcta--gtgcctattttgagttcacggaggaggaaaattatgcaggcattttccaaca |
342217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 9e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 707 - 800
Target Start/End: Original strand, 37037942 - 37038035
Alignment:
| Q |
707 |
ttgtattcccattattattatagtggagatttaagaggcttacgggtcccgtggtttttccttactcacattgagaaggttttccacgctaaaa |
800 |
Q |
| |
|
|||||||| |||||| |||||||| | |||||||||| | |||||||||||||| ||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
37037942 |
ttgtattctcattatcgttatagtgaaagtttaagaggcccaagggtcccgtggtttctcctttctcacattgagaaggttttcctcgctaaaa |
37038035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 833 - 867
Target Start/End: Original strand, 37038074 - 37038108
Alignment:
| Q |
833 |
agtgcctattttgagttcacggaggagggaaatta |
867 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37038074 |
agtgcctattttgagttcacggaggagagaaatta |
37038108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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