View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2329_low_11 (Length: 429)
Name: NF2329_low_11
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2329_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 45122843 - 45122406
Alignment:
| Q |
1 |
aaacactaacaagaacttgaaaaaggtttattgagagtgccttacaacaaattcagggatcattttaaaagtttactcaaatgtatttaaaaacttgatc |
100 |
Q |
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| T |
45122843 |
aaacactaacaagaacttgaaaaaggtttattgagagtgccttacaacaaattcagggatcattttaaaagtttactcaaatgtatttaaaaacttgatc |
45122744 |
T |
|
| Q |
101 |
attgttatatactttgcatgttttatgacattgcaattaaatgtattgaaattcttatatacatcgcatgttatatgacaatgcaattaaatgtattgaa |
200 |
Q |
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| T |
45122743 |
attcttatatactttgcatgttttatgacattgcaattaaatgtattgaaattcttatatacatcgcatgttatatgacaatgcaattaaatgtattgaa |
45122644 |
T |
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| Q |
201 |
atataaaagataataagtccaatatattttaaagctaatttcatgtctcagttatcttggacaacaaaccataacttcaacatct--------------- |
285 |
Q |
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| T |
45122643 |
atataaaagataataagtccaatatattttaaagctaatttcatgtctcaattatcttggacaacaaaccataacttcaacatctttgccttcacactca |
45122544 |
T |
|
| Q |
286 |
------aattttgcacagaagctcgagctcaccgagaatgaagagaaaatgtgcgaggtgctttgcgtcactttaaagaaatacagacttcaaatcac-- |
377 |
Q |
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| T |
45122543 |
aaaagaaattttgcacagaagctcgagctcaccgagaatgaagagaaaat-------gtgctttgcgtcactttaaagaaatacagacttcaaatcacta |
45122451 |
T |
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| Q |
378 |
---------ttgtaatcaagtttagtgcaccccaaactatccaac |
413 |
Q |
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| T |
45122450 |
gtgaatgggttgtaatcaagtttagcgcaccccaaactatccaac |
45122406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 45121969 - 45121904
Alignment:
| Q |
151 |
attcttatatacatcgcatgttatatgacaatgcaattaaatgtattgaaatataaaagataataa |
216 |
Q |
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| T |
45121969 |
attcttatatacattgcatgttatatgacattgtaattaaacgtattaaaatataaaagataataa |
45121904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 45131060 - 45131015
Alignment:
| Q |
240 |
ttcatgtctcagttatcttggacaacaaaccataacttcaacatct |
285 |
Q |
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| T |
45131060 |
ttcatgtctcaattttcttggaccacaaaccataactccaacatct |
45131015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 45122023 - 45121979
Alignment:
| Q |
187 |
ttaaatgtattgaaatataaaagataataagtccaatatatttta |
231 |
Q |
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| T |
45122023 |
ttaaatgtattgaaatataaaagattataagcccaacatttttta |
45121979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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