View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2329_low_12 (Length: 410)
Name: NF2329_low_12
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2329_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 3598434 - 3598099
Alignment:
| Q |
18 |
taatttacactttgtaggggggaatagaattcattgcacattatcggatgactatgccgtgaaaatgcaaaagtttttggataatcatgattatcacttc |
117 |
Q |
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| T |
3598434 |
taatttacactttgtaggggggaatagaattcattgcacattatcggatgactatgccgtgaaaatgtaaaagtttttggataatcatgattatcacttc |
3598335 |
T |
|
| Q |
118 |
ctgtgattgttttgtaaaacttcaggtaaagttcctaaatctttagtcttaaaacttttatgtcaactatagtgtttttatataaaattcatcatatgtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3598334 |
ctgtgattgttttgtaaaacttcaggtaaagttcctaaatctttagtcttaaaacttttatgtcaactatagtgtttttatataaaattcatcatatgtt |
3598235 |
T |
|
| Q |
218 |
gatttcaacctctgaattatcattaactcgattcgagatgtgactatttttagtagtgaaattgagattcacatttctactactttgtctgttatttctt |
317 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3598234 |
gatttcaacctctgaagtatcattaacttgattcgagatgtgactatttttagtagtgaaattgagattcacgtttctactactttgtctgttatttctt |
3598135 |
T |
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| Q |
318 |
atatttctttctttatttccaccatatttcatgctt |
353 |
Q |
| |
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|||||||||||||||||||| | ||||||||||||| |
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| T |
3598134 |
atatttctttctttatttcctctatatttcatgctt |
3598099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 400
Target Start/End: Original strand, 4356591 - 4356973
Alignment:
| Q |
18 |
taatttacactttgtaggggggaatagaattcattgcacattatcggatgactatgccgtgaaaatgcaaaagtttttggataatcatgatt-atcactt |
116 |
Q |
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|||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| | |||| |||||||||||||| ||| ||| |
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| T |
4356591 |
taatttgcacttcgtaggggg-aatagaattcattgcacattatcggatgactatgccgtgagaatgcaacaattttaggataatcatgattcatcgctt |
4356689 |
T |
|
| Q |
117 |
cctgtgattgttttgtaaaacttcaggtaaagttcctaaatctttagtcttaaaacttttatgtcaactatagtgtttttatataaaattcatcatatgt |
216 |
Q |
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||||||| |||| || ||||||||||||||||||||| |||||||||| || ||| |||||||||||||||||||||||| ||||| ||||||||||| | |
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| T |
4356690 |
cctgtgactgttctgcaaaacttcaggtaaagttccttaatctttagtatttaaatttttatgtcaactatagtgtttttctataatattcatcatatat |
4356789 |
T |
|
| Q |
217 |
tgatttcaacctctgaattatcattaactcgattcgagat--gtgactatttttagtagtgaaattgagattcacatttctactactttgtctgttattt |
314 |
Q |
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|||| ||||||| |||| ||||| |||| || | ||||| |||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
4356790 |
tgatctcaacctttgaagtatcaggaacttgagttgagatacgtgactatttttgttagcgaaattgagattcacgtttctactactttgtctgttattt |
4356889 |
T |
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| Q |
315 |
cttatatttctttctttatttccaccatatttcatgcttatgattgtgtgtcaatataattttgttgaataatgtattagcctttg |
400 |
Q |
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| T |
4356890 |
cttatatttctttctttatttcctc--tatttcatgcttatgactatgtataaatatatttttgttgaataatgtattagcctttg |
4356973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 398
Target Start/End: Original strand, 24455633 - 24455738
Alignment:
| Q |
291 |
tttctactactttgtctgttatttcttatatttctttctttatttccaccatatttcatgcttatgattgtgtgtcaatataattttgttgaataatgta |
390 |
Q |
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|||||||||||| || |||||||| | |||||||| ||| |||||| | |||||||||||| |||||| || ||| || ||||||||||| ||| | |
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| T |
24455633 |
tttctactacttcgttagttatttcatctatttcttgcttcatttcctc--tatttcatgcttctgattgagtatcatcctatttttgttgaattatgca |
24455730 |
T |
|
| Q |
391 |
ttagcctt |
398 |
Q |
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|||||||| |
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| T |
24455731 |
ttagcctt |
24455738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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