View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2329_low_13 (Length: 406)
Name: NF2329_low_13
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2329_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 14 - 389
Target Start/End: Original strand, 3658589 - 3658964
Alignment:
| Q |
14 |
cataggtagggacagaagggtagaatcatcagacataaaaaacctagtttatttgcaagcaattgtgaaagaaactttaaggttataccctccaggtcca |
113 |
Q |
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| T |
3658589 |
cataggtagggacagaagggtagaatcatcagacataaaaaacctagtttatttgcaagcaattgtgaaagaaactttaaggttataccctccaggtcca |
3658688 |
T |
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| Q |
114 |
ctattagtaccccatgaagcaacagaagattgttacattcaagactattatgtaccaaaagggacacgtgtgtttgcaaatgtgtggaaattacatagag |
213 |
Q |
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| T |
3658689 |
ctattagtaccccatgaagtaacagaagattgttacattcaagactattatgtaccaaaagggacacgtgtgtttgcaaatgtgtggaaattacatagag |
3658788 |
T |
|
| Q |
214 |
atccaagtatttggttagagcctgaaaagtttttacctgaaaggtttattaatgagaatggagaaattgatcatgaaagtcaccattttgagtaccttcc |
313 |
Q |
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| T |
3658789 |
atccaagtatttggttagagcctgaaaagtttttacctgaaaggtttattaatgagaatggagaaattgatcatgaaagtcaccattttgagtaccttcc |
3658888 |
T |
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| Q |
314 |
ttttggattagggagaagagcttgtcctggatcgttgtttgctacacaagttattctcattacacttgctcgttta |
389 |
Q |
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| T |
3658889 |
ttttggattagggagaagagcttgtcctggatcgttgtttgctacacaagttattctcattacacttgctcgttta |
3658964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 15 - 382
Target Start/End: Original strand, 7842844 - 7843211
Alignment:
| Q |
15 |
ataggtagggacagaagggtagaatcatcagacataaaaaacctagtttatttgcaagcaattgtgaaagaaactttaaggttataccctccaggtccac |
114 |
Q |
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| T |
7842844 |
ataggtaagggcagaagggtagaatcgtcggacataaaaaacttggtttatttgcaagcaattttaaaagaaactttgaggttatacccagcagctccac |
7842943 |
T |
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| Q |
115 |
tattagtaccccatgaagcaacagaagattgttacattcaagactattatgtaccaaaagggacacgtgtgtttgcaaatgtgtggaaattacatagaga |
214 |
Q |
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|| ||| |||||||||||| |||||||||||| ||||||||| |||||||||||||||||| |||||||| ||| ||||| ||||||||||||||||| |
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| T |
7842944 |
tactagcaccccatgaagccacagaagattgtaacattcaaggctattatgtaccaaaaggaacacgtgtatttttcaatgtatggaaattacatagaga |
7843043 |
T |
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| Q |
215 |
tccaagtatttggttagagcctgaaaagtttttacctgaaaggtttattaatgagaatggagaaattgatcatgaaagtcaccattttgagtaccttcct |
314 |
Q |
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| T |
7843044 |
tccaagtatttggtcagagcctgaaaagtttttacctgaaaggtttattaatgagaatggagaaattgatcatgaaagtcatcattttgagtaccttcct |
7843143 |
T |
|
| Q |
315 |
tttggattagggagaagagcttgtcctggatcgttgtttgctacacaagttattctcattacacttgc |
382 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||| |
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| T |
7843144 |
tttggattagggagaagagcttgtcctggatctttgtttgctacacaaaatagtctcattacacttgc |
7843211 |
T |
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