View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2329_low_14 (Length: 405)
Name: NF2329_low_14
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2329_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 399
Target Start/End: Complemental strand, 7330187 - 7329805
Alignment:
| Q |
17 |
aaagtgtggagttttagctagggtgaaaatagactataaaatgagtacaataaccaaacaagttgtagttccaataagctccaatatttttcttcatagc |
116 |
Q |
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| T |
7330187 |
aaagtgtggagttttagctcgggtgaaaatagactataaaatgagtacaataaccaaacaagttgtagttccaataagctccaatatttttcttcatagc |
7330088 |
T |
|
| Q |
117 |
attccgcagccatgctccatcattctcaagttcaggttgtagatctacaattcaaaatgaacccatttaaacaatatatcaatgnnnnnnnnnnnnncta |
216 |
Q |
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| T |
7330087 |
attccgcagccatgctccatcattctcaagttcaggttgtagatctacaattcaaaatgaacccatttaaacaatatatcgatgaaaaacgaaaaaacta |
7329988 |
T |
|
| Q |
217 |
gaacataaacacaaagtaaatgatgtgaagtgtttcattattctcaagtttatagcatcttataacatgccaacaagttgcaaactgtagtgcttggaac |
316 |
Q |
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| T |
7329987 |
gaacataaacacaaagtaaatgatgtgaagtgtttcatcattctcaagtttatagcatcttataatatgccaacaagttgcaaactgtagtgcttggaac |
7329888 |
T |
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| Q |
317 |
tatcagatatgtactgcagtggtaatttcataatagagttttcctcattctcaagtttccaaagctcatttcattcatttcag |
399 |
Q |
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| T |
7329887 |
tatcagatatgtactgcagtggtaatttcctaatagagttttcctcattctcaagtttccaaagttcatttcattcatttcag |
7329805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 7309778 - 7309957
Alignment:
| Q |
23 |
tggagttttagctagggtgaaaatagact--ataaaatgagtacaataaccaaacaagttgtagttccaataagctccaatatttttcttcatagcattc |
120 |
Q |
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| T |
7309778 |
tggagttttagctcgggtgaaaataggctctataaaattagtacaataaacaaacaagtt------ccaaaaagctgcaatattttgcttcatagcattc |
7309871 |
T |
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| Q |
121 |
cgcagccatgctccatcattc--------------tcaagttcaggttgtagatctacaattcaaaatgaacccatttaaacaata |
192 |
Q |
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| T |
7309872 |
tgccgccatgttccatcattcatgcttgatgtgtttgaagctcaggttgtagatctacaattcaaaatgaaccaatttcaacaata |
7309957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 324
Target Start/End: Original strand, 7309996 - 7310079
Alignment:
| Q |
231 |
agtaaatgatgtgaagtgtttcattattctcaagtttatagcatcttataacatgccaacaagttgcaaactgtagtgcttggaactatcagat |
324 |
Q |
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| T |
7309996 |
agtaaatcatgtgaagtgtttcattattctcaagattatagcct----------gccaacaagttacaaaatgtagtgcttggaacaatcagat |
7310079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 390
Target Start/End: Original strand, 22482274 - 22482321
Alignment:
| Q |
343 |
ttcataatagagttttcctcattctcaagtttccaaagctcatttcat |
390 |
Q |
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| T |
22482274 |
ttcataatagagttttcccgattcttaactttccaaagctcatttcat |
22482321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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