View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2329_low_17 (Length: 391)
Name: NF2329_low_17
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2329_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 11 - 374
Target Start/End: Complemental strand, 50906652 - 50906289
Alignment:
| Q |
11 |
cagagatgagaatcttacaaaactatattcttgtgaatttagctattgttttttgtgtcacctgaaatacttgcattgcacaaacacgccatccactgat |
110 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50906652 |
cagaaatgagaatcttacaaaactatattcttgtgaatttagctattgttttttgtgtcacctgaaatacttgcattgcacaaacacgccatccactgat |
50906553 |
T |
|
| Q |
111 |
tttatggatactgtttgttacatactcattgatatggtgatgcaaaattggtatatgttacaaggatatacaacaaaacttgaaacaaataaatatctaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50906552 |
tttatggatactgtttgttacatactcattgatatggtgatgcaaaattggtatatgttacaaggatatacaacaaaacttgaaacaaataaatatctaa |
50906453 |
T |
|
| Q |
211 |
agaaaaccctttctttaacctataaagattttcaacctgattggctcataatataattttgaaaacaggccagtagaagttaaattaaaatgacgaaaag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50906452 |
agaaaaccctttctttaacctataaagattttcaacctgattggctcataatataattttgaaaacaggccagtagaagttaaattaaaatgacgaaaag |
50906353 |
T |
|
| Q |
311 |
aatataccacataataaaacgtcttagttcttaccaattatttattaagttggattcttcttgt |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50906352 |
aatataccacataataaaacgtcttagttcttaccaattatttattaagttggattcttcttgt |
50906289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 16 - 374
Target Start/End: Original strand, 38042243 - 38042600
Alignment:
| Q |
16 |
atgagaatcttacaaaactatattcttgtgaatttagctattgttttttgtgtcacctgaaatacttgcattgcacaaacac--gccatccactgatttt |
113 |
Q |
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||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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|
| T |
38042243 |
atgagaaccttacaaaactatattcttgtgaatttatcttttgttttttgtgtcacctgaaatacttgcattgcacaaacacaattcatgcactgatttt |
38042342 |
T |
|
| Q |
114 |
atggatactgtttgttacatactcattgatatggtgatgcaaaattggtatatgttacaaggatatacaacaaaacttgaaacaaataaatatctaaaga |
213 |
Q |
| |
|
||||||| ||| | ||||||||| | |||||||||||||||||||||||||| |||| | | || |||||||||| ||||||||||||| | ||||| |
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| T |
38042343 |
atggataatgtctattacatactagtagatatggtgatgcaaaattggtatatattacgaaaacatgcaacaaaactcgaaacaaataaatcttcaaaga |
38042442 |
T |
|
| Q |
214 |
aaaccctttctttaacctataaagattttcaacctgattggctcataatataattttgaaaacaggccagtagaagttaaattaaaatgacgaaaagaat |
313 |
Q |
| |
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||| ||||||||||||| |||| ||||||||| | ||||| ||| ||| ||||||||||||| | |||||||||| ||||||||||| ||||||||| |
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| T |
38042443 |
aaaacctttctttaacc--taaatattttcaacttaattggtacatgatagaattttgaaaacaagtcagtagaagtccaattaaaatgatgaaaagaat |
38042540 |
T |
|
| Q |
314 |
ataccacataataaaacgtcttagttcttaccaattatttattaagttggattcttcttgt |
374 |
Q |
| |
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||| ||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||| |
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|
| T |
38042541 |
atatcacataacaaaacgtcttagttcttaccgatta-ttattaagttggattcttcttgt |
38042600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 38038866 - 38038940
Alignment:
| Q |
16 |
atgagaatcttacaaaactatattcttgtgaatttagctattgttttttgtgtcacctgaaatacttgcattgca |
90 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||| | ||||||||||||||| || ||||| |||||||||| |
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| T |
38038866 |
atgagaaccttatgaaactatattcttgtgaatttatgtgttgttttttgtgtcatctcaaataattgcattgca |
38038940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 38027772 - 38027848
Alignment:
| Q |
14 |
agatgagaatcttacaaaactatattcttgtgaatttagctattgttttttgtgtcacctgaaatacttgcattgca |
90 |
Q |
| |
|
||||||||| |||| ||||||||||||||| |||||| | ||||||||||||||| || ||||| || ||||||| |
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| T |
38027772 |
agatgagaaccttaagaaactatattcttgtcaatttatgtgttgttttttgtgtcatctaaaataattacattgca |
38027848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 16 - 374
Target Start/End: Original strand, 21633904 - 21634261
Alignment:
| Q |
16 |
atgagaatcttacaaaactatattcttgtgaatttagctattgttttttgtgtcacctgaaatacttgcattgcacaaacac--gccatccactgatttt |
113 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
21633904 |
atgagaaccttacaaaactatattcttgtgaatttatcttttgttttttgtgtcacctgaaatacttgcattgcacaaacacaattcatgcactgatttt |
21634003 |
T |
|
| Q |
114 |
atggatactgtttgttacatactcattgatatggtgatgcaaaattggtatatgttacaaggatatacaacaaaacttgaaacaaataaatatctaaaga |
213 |
Q |
| |
|
||||||| ||| | ||||||||| | |||||||||||||||||||||||||| |||| | | || |||||||||| ||||||||||||| | ||||| |
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| T |
21634004 |
atggataatgtctattacatactagtagatatggtgatgcaaaattggtatatattacgaaaacatgcaacaaaactcgaaacaaataaatcttcaaaga |
21634103 |
T |
|
| Q |
214 |
aaaccctttctttaacctataaagattttcaacctgattggctcataatataattttgaaaacaggccagtagaagttaaattaaaatgacgaaaagaat |
313 |
Q |
| |
|
||| ||||||||||||| |||| ||||||||| | ||||| ||| ||| ||||||||||||| | |||||||||| ||||||||||| ||||||||| |
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|
| T |
21634104 |
aaaacctttctttaacc--taaatattttcaacttaattggtacatgatagaattttgaaaacaagtcagtagaagtccaattaaaatgatgaaaagaat |
21634201 |
T |
|
| Q |
314 |
ataccacataataaaacgtcttagttcttaccaattatttattaagttggattcttcttgt |
374 |
Q |
| |
|
||| ||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||| |
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|
| T |
21634202 |
atatcacataacaaaacgtcttagttcttaccgatta-ttattaagttggattcttcttgt |
21634261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 21608576 - 21608650
Alignment:
| Q |
16 |
atgagaatcttacaaaactatattcttgtgaatttagctattgttttttgtgtcacctgaaatacttgcattgca |
90 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||| | ||||||||||||||| || ||||| |||||||||| |
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|
| T |
21608576 |
atgagaaccttatgaaactatattcttgtgaatttatgtgttgttttttgtgtcatctcaaataattgcattgca |
21608650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 178 - 374
Target Start/End: Original strand, 3072657 - 3072853
Alignment:
| Q |
178 |
atacaacaaaacttgaaacaaataaatatctaaagaaaaccctttctttaacctataaagattttcaacctgattggctcataatataattttgaaaaca |
277 |
Q |
| |
|
||||||||||||| |||||||| || | | || |||||| |||||||||||||| ||| |||||||||| |||| | | ||| | | ||||||| ||||| |
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|
| T |
3072657 |
atacaacaaaactcgaaacaaacaagtctttacagaaaaacctttctttaacctgtaatgattttcaacttgatagacacatgagagaattttgtaaaca |
3072756 |
T |
|
| Q |
278 |
ggccagtagaagttaaattaaaatgacgaaaagaatataccacataataaaacgtcttagttcttaccaattatttattaagttggattcttcttgt |
374 |
Q |
| |
|
| |||||||||||||||||| |||| |||| |||| || |||| |||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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|
| T |
3072757 |
agtcagtagaagttaaattaagatgatgaaatgaatttatgacatgataaaacgtcttagttcttaacaattaattattaagttggattcttcttgt |
3072853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 3072534 - 3072660
Alignment:
| Q |
11 |
cagagatgagaatcttacaaaactatattcttgtgaatttagctattgttttttgtgtcacctgaaatacttgcattgcacaaacac--gccatccactg |
108 |
Q |
| |
|
|||| ||||||| | |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| | || ||||| |
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|
| T |
3072534 |
cagaaatgagaaccgtacaaaactatattcttgtgaatttatcttttgttttttgtgtcacctgaaatacttgcattgcacaaacacaagttatacactg |
3072633 |
T |
|
| Q |
109 |
attttatggatactgtttgttacatac |
135 |
Q |
| |
|
|||| ||||| ||||| | |||||||| |
|
|
| T |
3072634 |
atttaatggacactgtctattacatac |
3072660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 213 - 374
Target Start/End: Original strand, 17969422 - 17969583
Alignment:
| Q |
213 |
aaaaccctttctttaacctataaagattttcaacctgattggctcataatataattttgaaaacaggccagtagaagttaaattaaaatgacgaaaagaa |
312 |
Q |
| |
|
|||||| || ||||||||| ||| |||||||||| |||| | | ||| | | ||||||| ||||| | |||||||||||||||||| |||| |||| ||| |
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|
| T |
17969422 |
aaaacctttactttaacctgtaatgattttcaacttgatagacacatgagagaattttgtaaacaagtcagtagaagttaaattaagatgatgaaatgaa |
17969521 |
T |
|
| Q |
313 |
tataccacataataaaacgtcttagttcttaccaattatttattaagttggattcttcttgt |
374 |
Q |
| |
|
| || |||| |||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
17969522 |
tttatgacatgataaaacgtcttagttcttaacaattaattattaagttggattcttcttgt |
17969583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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