View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2329_low_18 (Length: 389)
Name: NF2329_low_18
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2329_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 75 - 373
Target Start/End: Original strand, 45026753 - 45027051
Alignment:
| Q |
75 |
gtgttattttattgttctcttgttgaactattattcattcggcctctaccttaccaattttgtatgtgctttgcaattgttgtatacctgcattaactat |
174 |
Q |
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| T |
45026753 |
gtgttattttattgttctcttgttgaactattattcattcggcctctaccttaccaattttgtatgtgctttgcaattgttgtatacctgtattaactat |
45026852 |
T |
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| Q |
175 |
acagagtgcgtatgtatcttttttccttgttcgttttaaatttttcatattccannnnnnnncttatcatttaattcacatatcttcattcacatttcat |
274 |
Q |
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| T |
45026853 |
acagagtgcgtatgtatcttttttccttgttcgttttaaatttttcatattccattttttttcttatcatttaattcacatatcttcattcacatttcat |
45026952 |
T |
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| Q |
275 |
taaaattgtttcacacaacactatttgacatttatgacacttataagcattatagacaaactattctacctccaatgcctttagctcacaccaaataaa |
373 |
Q |
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| T |
45026953 |
taaaattgtttcacacaacactatttgacatttatgacacttataagcattatagacaaactattctacctccaatgcctttagctcacaccaaataaa |
45027051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 45026684 - 45026730
Alignment:
| Q |
11 |
cagagactgaggtgcaactttggagcttttggttgttaaagtatttc |
57 |
Q |
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| T |
45026684 |
cagagactgaggtgcaactttggagcttttggttgttaaagtatttc |
45026730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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