View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2329_low_24 (Length: 343)
Name: NF2329_low_24
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2329_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 23 - 341
Target Start/End: Original strand, 49606 - 49919
Alignment:
| Q |
23 |
cacaataaattaattaaatgaatcacaagtttgaatataatagctagtgtggcaatttatatagtttgaatcatcatatggtatacatgcaatgtagata |
122 |
Q |
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| T |
49606 |
cacaataaattaattaaatgaatcacaagtttgaatataatagctagtgtggcaatttata--gtttgaatcatcatatggtatacatgcaatgtagata |
49703 |
T |
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| Q |
123 |
cgaaattagaagatctcactaaccactgacgtttttctttttaatatcttcatgtttcacaccctgtaataatgacttataattaagtaagtaaaaccga |
222 |
Q |
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| T |
49704 |
cgaaattagaagatctcactaaccactgacgtttttctttttaatatcttcatgtttcacaccctgtaat---gacttataattaagtaagtaaaaccga |
49800 |
T |
|
| Q |
223 |
cctaagataaggaaaaaatgtagtgtatgcgtgtgtgtaatgtaaacgagattaaacctgatttgttgaagcagtgagatgttgttgaggtggccttagt |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49801 |
cctaagataaggaaaaaatgtagtgtatgcgtgtgtgtaatgtaaacgagattaaacctgatttgttgaagcagtgagatgttgttgaggtggccttagt |
49900 |
T |
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| Q |
323 |
tttgtcctctttttgtcct |
341 |
Q |
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||||||||||||||||||| |
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| T |
49901 |
tttgtcctctttttgtcct |
49919 |
T |
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