View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2329_low_27 (Length: 332)
Name: NF2329_low_27
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2329_low_27 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 43037830 - 43037515
Alignment:
| Q |
18 |
tggacttccttgtttccttacaattaataatccctgcgtgtattgaannnnnnnnnnnnnnnnnnn-actgcagaagaaatggttttgctgttgcacaaa |
116 |
Q |
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| T |
43037830 |
tggacttccttgtttccttacaattaataatccctgcgtgtattgaatttttatttttattttttttactgctgaagaaatggttttgctgttgcacaaa |
43037731 |
T |
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| Q |
117 |
cgtccattctgagtcatgactcatgagagtgctttgagctagggggaaaataacaattaggaaaatagatattacgttatatttatgatttatggtgaac |
216 |
Q |
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| T |
43037730 |
cgtccattctgagtcatgactcatgagagtgctttgagctagggggaaaataacaattaggaaaatagatattacgttatatttatgatttatggtgaac |
43037631 |
T |
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| Q |
217 |
aatcactgggaattttttgacccaatacttgttggattgaaacttaacttcacatgataatttttcgattcttatcgactcatatttctctattgtttaa |
316 |
Q |
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| T |
43037630 |
aatcactgggatttttttgacctaatacttgttgtattgaaacttaacttcacatgataatttttcgattcttatcgactcatatttctctattgtttaa |
43037531 |
T |
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| Q |
317 |
gggtgacgtttgtgtt |
332 |
Q |
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| T |
43037530 |
gggtgacgtttgtgtt |
43037515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 90 - 332
Target Start/End: Original strand, 739102 - 739344
Alignment:
| Q |
90 |
gaagaaatggttttgctgttgcacaaacgtccattctgagtcatgactcatgagagtgctttgagctagggggaaaataacaattaggaaaatagatatt |
189 |
Q |
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| T |
739102 |
gaagaaatggttttgctgttgcacaaacgtccattctgagtcatgactcatgagagtgctttgagctagggggaaaataacaattaggaaaatagatatt |
739201 |
T |
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| Q |
190 |
acgttatatttatgatttatggtgaacaatcactgggaattttttgacccaatacttgttggattgaaacttaacttcacatgataatttttcgattctt |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
739202 |
acgttatatttatgatttatggtgaacaatcactgggatttttttgacctaatacttgttgtattgaaacttaacttcacatgataatttttcgattctt |
739301 |
T |
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| Q |
290 |
atcgactcatatttctctattgtttaagggtgacgtttgtgtt |
332 |
Q |
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| T |
739302 |
atcgactcatatttctctattgtttaagggtgaagtttgtgtt |
739344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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