View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2329_low_28 (Length: 332)
Name: NF2329_low_28
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2329_low_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 47804886 - 47804586
Alignment:
| Q |
16 |
cagagatggaaatagctttaggcatgaaggaaacttgcaagagtattccattagacatttcatcatgttgaacacctaaaagttaaacgagagaaatgat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
47804886 |
cagagatggaaatagctttaggcatgaaggaaacttgcaagagtattccattagacatttgatcatgttgaacacctaaaagttaaacaagagaaatgat |
47804787 |
T |
|
| Q |
116 |
caatcatttaaagtacatacatagaaccaaatattgagaaatataaagtagcgttaaaaagctagcaagatctatatgcaatttattatacctatgactc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47804786 |
caatcatttaaagtacatacatagaaccaaatattgagaaatataaagtagcgttaaaaagctagcaagatctatatgcaatttattatacctatgactc |
47804687 |
T |
|
| Q |
216 |
tcacaagatggtatgaattccttagcttatgatcattggaatctactctggctctaacaaaagttccaaccaccctactcgcaaagctttcaggttgttt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47804686 |
tcacaagatggtatgaattccttagcttatgatcattggaatctactctggctctaacaaaagttccaaccaccctactcgcaaagctttcaggttgttt |
47804587 |
T |
|
| Q |
316 |
c |
316 |
Q |
| |
|
| |
|
|
| T |
47804586 |
c |
47804586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 47807448 - 47807148
Alignment:
| Q |
16 |
cagagatggaaatagctttaggcatgaaggaaacttgcaagagtattccattagacatttcatcatgttgaacacctaaaagttaaacgagagaaatgat |
115 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
47807448 |
cagaaatggaaatagctttaggcatgaaggaaacttgcaagagtattccattagacatttcatcatgttgaacacctaaaagttaaacaagagaaatgat |
47807349 |
T |
|
| Q |
116 |
caatcatttaaagtacatacatagaaccaaatattgagaaatataaagtagcgttaaaaagctagcaagatctatatgcaatttattatacctatgactc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47807348 |
caatcatttaaagtacatacatagaaccaaatattgagaaatataaagtagcgttaaaaagctagcaagatctatatgcaatttattatacctatgactc |
47807249 |
T |
|
| Q |
216 |
tcacaagatggtatgaattccttagcttatgatcattggaatctactctggctctaacaaaagttccaaccaccctactcgcaaagctttcaggttgttt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
47807248 |
tcacaagatggtatgaattccttagcttatgatcattggaatctactctggctctaacaaaagttccaatcaccctactcgcaaagctttcaggctgttt |
47807149 |
T |
|
| Q |
316 |
c |
316 |
Q |
| |
|
| |
|
|
| T |
47807148 |
c |
47807148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University