View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2329_low_30 (Length: 326)

Name: NF2329_low_30
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2329_low_30
NF2329_low_30
[»] chr2 (2 HSPs)
chr2 (17-319)||(41383012-41383306)
chr2 (22-80)||(43851788-43851846)
[»] scaffold0531 (1 HSPs)
scaffold0531 (17-197)||(3979-4159)
[»] chr6 (6 HSPs)
chr6 (17-191)||(8031510-8031687)
chr6 (17-98)||(7972986-7973067)
chr6 (17-98)||(8040974-8041055)
chr6 (17-85)||(7980031-7980099)
chr6 (243-295)||(8040691-8040743)
chr6 (237-273)||(7973297-7973333)
[»] chr7 (1 HSPs)
chr7 (18-84)||(14199153-14199219)
[»] chr3 (2 HSPs)
chr3 (22-83)||(361787-361848)
chr3 (19-83)||(38827953-38828017)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 41383012 - 41383306
Alignment:
Q  17 caagaacaccagctccaaccatggcagtgacattgtggaaagtagagtaccaccattttgcatttctttcagagttatttggttgtcagtcttcactttg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41383012 caagaacaccagctccaaccatggcagtgacattgtggaaagtagagtaccaccattttgcatttctttcagagttatttggttgtcggtcttcactttg 41383111  T
Q  117 ttttttcatccctgaatttcctctttctgctgcactatctgattttccttcaatctatttgaactagaacaataaattaaaagagnnnnnnnncatatat 216  Q
    ||||| ||||||||||||||||||||        ||||||| |||||||||||||||||||||||||||||||||||||||||||        |||||||    
T  41383112 tttttccatccctgaatttcctcttt--------ctatctggttttccttcaatctatttgaactagaacaataaattaaaagagttgtttttcatatat 41383203  T
Q  217 acatacataataaaaatctatttgatcttattatagcaatatcctcgtagtagttatattagaataatattctcatagtttctctcaaatgaaataaacc 316  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41383204 acatacacaataaaaatctatttgatcttattatagcaatatcctcgtagtagttatattagaataatattctcatagtttctctcaaatgaaataaacc 41383303  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 43851846 - 43851788
Alignment:
Q  22 acaccagctccaaccatggcagtgacattgtggaaagtagagtaccaccattttgcatt 80  Q
    ||||||||||||||||||||||| |||||||| ||||  | ||||||||||||||||||    
T  43851846 acaccagctccaaccatggcagtaacattgtgaaaagctgcgtaccaccattttgcatt 43851788  T

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Target: scaffold0531 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 3979 - 4159
Alignment:
Q  17 caagaacaccagctccaaccatggcagtgacattgtggaaagtagagtaccaccattttgcatttctttcagagttatttggttgtcagtcttcactttg 116  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||| ||||  ||| || ||||  | ||||||||| ||||    
T  3979 caagaacaccagctccaaccattgcagtgacattgtggaaagaagaataccaccattttgcattcctttgggagctaattggaagccagtcttcaatttg 4078  T
Q  117 ttttttcatccctgaatttcctctttctgctgcactatctgattttccttcaatctatttgaactagaacaataaattaaa 197  Q
    ||| | | ||||||| |||||| |||| | ||| || ||| | ||||||||||||||||| ||| |||||| |||||||||    
T  4079 tttctccctccctgattttcctatttccgttgcgctctctaagtttccttcaatctatttcaacgagaacattaaattaaa 4159  T

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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 8031687 - 8031510
Alignment:
Q  17 caagaacaccagctccaaccatggcagtgacattgtggaaagtagagtaccaccattttgcatttctttcagagttatttggttgtcagtcttcactttg 116  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||| ||||||||  ||  |||  | ||||||||| ||||    
T  8031687 caagaacaccagctccaaccattgcagtgacattgtggaaagaagaataccaccattttgcattcctttcagaactaactggaagccagtcttcaatttg 8031588  T
Q  117 ttttttcatccc---tgaatttcctctttctgctgcactatctgattttccttcaatctatttgaactagaacaataa 191  Q
    ||||| | || |   ||| |||||||||| | ||||||| | ||  |||||||||| |||||||||| ||||||||||    
T  8031587 tttttccctctctgatgattttcctctttttcctgcactctgtgggtttccttcaacctatttgaacgagaacaataa 8031510  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 7972986 - 7973067
Alignment:
Q  17 caagaacaccagctccaaccatggcagtgacattgtggaaagtagagtaccaccattttgcatttctttcagagttatttgg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||| ||||    
T  7972986 caagaacaccagctccaaccatggcagtgacattgtggaaagtcgagtaccaccattttgcattccttccagaattacttgg 7973067  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 8041055 - 8040974
Alignment:
Q  17 caagaacaccagctccaaccatggcagtgacattgtggaaagtagagtaccaccattttgcatttctttcagagttatttgg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| ||| ||||    
T  8041055 caagaacaccagctccaaccatggcagtgacattgtggaaagtcgagtaccaccattttgcattccttccagaattacttgg 8040974  T

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Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 7980031 - 7980099
Alignment:
Q  17 caagaacaccagctccaaccatggcagtgacattgtggaaagtagagtaccaccattttgcatttcttt 85  Q
    ||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||| ||||    
T  7980031 caagaacaccagctccaaccatggcagtgacattgtgaaaagctgagtaccaccattttgcattccttt 7980099  T

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Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 243 - 295
Target Start/End: Complemental strand, 8040743 - 8040691
Alignment:
Q  243 cttattatagcaatatcctcgtagtagttatattagaataatattctcatagt 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8040743 cttattatagcaatatcctcgtagtagttatattagaataatattctcatagt 8040691  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 7973297 - 7973333
Alignment:
Q  237 tttgatcttattatagcaatatcctcgtagtagttat 273  Q
    ||||||||| |||||| ||||||||||||||||||||    
T  7973297 tttgatcttgttatagaaatatcctcgtagtagttat 7973333  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 14199153 - 14199219
Alignment:
Q  18 aagaacaccagctccaaccatggcagtgacattgtggaaagtagagtaccaccattttgcatttctt 84  Q
    ||||||||||||||||||||||||||| ||||||||||| | ||| |||||||||||||||||||||    
T  14199153 aagaacaccagctccaaccatggcagtaacattgtggaatgcagaataccaccattttgcatttctt 14199219  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 361787 - 361848
Alignment:
Q  22 acaccagctccaaccatggcagtgacattgtggaaagtagagtaccaccattttgcatttct 83  Q
    |||||||| |||||||| ||||| ||||| || ||||| || |||||||||||||| |||||    
T  361787 acaccagcaccaaccatagcagtcacattatgaaaagttgaataccaccattttgcttttct 361848  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 38827953 - 38828017
Alignment:
Q  19 agaacaccagctccaaccatggcagtgacattgtggaaagtagagtaccaccattttgcatttct 83  Q
    ||||||||||| ||||||||||| || | ||||||||| |  || ||||||||||| ||||||||    
T  38827953 agaacaccagcaccaaccatggctgttagattgtggaacgccgaataccaccatttggcatttct 38828017  T

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