View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2329_low_32 (Length: 323)

Name: NF2329_low_32
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2329_low_32
NF2329_low_32
[»] chr8 (1 HSPs)
chr8 (12-305)||(28530351-28530644)


Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 12 - 305
Target Start/End: Original strand, 28530351 - 28530644
Alignment:
Q  12 catcatcaccaggaggaggagatggagggcaccaatggaaggctatgattgatgcattgaggtttaagtctgtgaggagattttctaccattcctttgct 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28530351 catcatcaccaggaggaggagatggagggcaccaatggaaggctatgattgatgcattgaggtttaagtctgtgaggagattttctagcattcctttgct 28530450  T
Q  112 tgctgctagttatgaaatttctaggaagaatttgaggaacaagttggctcgtaaaagaacagctaacgatgaagatgagaatatttttgatgctgctttt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28530451 tgctgctagttatgaaatttctaggaagaatttgaggaacaagttggctcgtaaaagaacagctaacgatgaagatgagaatatttttgatgctgctttt 28530550  T
Q  212 gatcttgatggtattacaaagccttcttggagaaactttagttatgaagatcttgttgctgcaaccgacaatttcaatcctggtaaggaattag 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28530551 gatcttgatggtattacaaagccttcttggagaaactttagttatgaagatcttgttgctgcaaccgacaatttcaatcctggtaaggaattag 28530644  T

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