View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2329_low_36 (Length: 305)

Name: NF2329_low_36
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2329_low_36
NF2329_low_36
[»] chr2 (2 HSPs)
chr2 (1-184)||(45089497-45089680)
chr2 (25-118)||(41083163-41083256)
[»] chr7 (3 HSPs)
chr7 (235-291)||(20389918-20389974)
chr7 (235-289)||(5790570-5790624)
chr7 (229-288)||(13946645-13946704)
[»] chr6 (6 HSPs)
chr6 (235-291)||(4434991-4435047)
chr6 (235-291)||(11178362-11178418)
chr6 (235-291)||(28057050-28057106)
chr6 (230-291)||(4091336-4091397)
chr6 (235-291)||(2314484-2314540)
chr6 (235-289)||(32444478-32444532)
[»] chr3 (5 HSPs)
chr3 (235-291)||(46595792-46595848)
chr3 (235-286)||(30766053-30766104)
chr3 (235-267)||(37267567-37267599)
chr3 (235-288)||(4865124-4865177)
chr3 (235-288)||(55041525-55041578)
[»] chr5 (4 HSPs)
chr5 (235-290)||(37720032-37720087)
chr5 (239-291)||(9263661-9263713)
chr5 (236-289)||(30441314-30441367)
chr5 (235-267)||(41290053-41290085)
[»] chr1 (5 HSPs)
chr1 (229-291)||(25867300-25867362)
chr1 (235-291)||(16961675-16961731)
chr1 (229-267)||(29395483-29395521)
chr1 (235-288)||(35161958-35162011)
chr1 (235-267)||(17962971-17963003)
[»] chr4 (2 HSPs)
chr4 (236-291)||(47520776-47520831)
chr4 (235-286)||(7131306-7131357)
[»] chr8 (2 HSPs)
chr8 (236-267)||(11075265-11075296)
chr8 (230-288)||(1662597-1662655)


Alignment Details
Target: chr2 (Bit Score: 176; Significance: 8e-95; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 45089497 - 45089680
Alignment:
Q  1 ttgaacatctagagcgcgaccgatgtggtccgataggtaaaagctgatagccggtggtcaaacaaatttttgacagactctaataacaccttagaatttg 100  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45089497 ttgaacatctagagcgtgaccgatgtggtccgatagggaaaagctgatagccggtggtcaaacaaatttttgacagactctaataacaccttagaatttg 45089596  T
Q  101 tgagtaagttttacacaatcttacaaaatcggtttgtaagataaggacaatgcttgcataatataacaacaagcttttttcttt 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45089597 tgagtaagttttacacaatcttacaaaatcggtttgtaagataaggacaatgcttgcataatataacaacaagcttttttcttt 45089680  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 41083256 - 41083163
Alignment:
Q  25 gtggtccgataggtaaaagctgatagccggtggtcaaacaaatttttgacagactctaataacaccttagaatttgtgagtaagttttacacaa 118  Q
    ||||||||||||   ||||||  |||||| |||||||||||||||| || || |||||||||||  || |||||||||| | ||||| ||||||    
T  41083256 gtggtccgatagtggaaagctagtagccgatggtcaaacaaattttggataggctctaataacatgtttgaatttgtgattgagtttaacacaa 41083163  T

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Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 20389918 - 20389974
Alignment:
Q  235 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20389918 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 20389974  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 5790624 - 5790570
Alignment:
Q  235 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatccta 289  Q
    ||||||||||||| | |||||||||| ||||||||| ||||||||||||||||||    
T  5790624 ttattatctaatcatgaactacaatgtaaacaaaacttctaaaaccctaatccta 5790570  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 288
Target Start/End: Original strand, 13946645 - 13946704
Alignment:
Q  229 aaatctttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcct 288  Q
    ||||| |||||||||||||||||||||||||||| |||| |  |  ||||||||||||||    
T  13946645 aaatccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatcct 13946704  T

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Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 4434991 - 4435047
Alignment:
Q  235 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4434991 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 4435047  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 11178362 - 11178418
Alignment:
Q  235 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 291  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11178362 ttattatctaatcctaaactacaatgcaaacaaaacatcaaaaaccctaatcctatg 11178418  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 28057050 - 28057106
Alignment:
Q  235 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 291  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28057050 ttattatctaatcctaaactacagtgcaaacaaaacatctaaaaccctaatcctatg 28057106  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 4091336 - 4091397
Alignment:
Q  230 aatctttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 291  Q
    |||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  4091336 aatccttattatctaatcctaaactacaatgcaaacaaaacatgcaaaaccctaatcctatg 4091397  T

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Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 2314540 - 2314484
Alignment:
Q  235 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 291  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  2314540 ttattatctaatcctaaactacaatgcaaacaaaacatcaaaaatcctaatcctatg 2314484  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 32444478 - 32444532
Alignment:
Q  235 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatccta 289  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  32444478 ttattatctaatcctaaactacaatgcaaacaaaacattaaaaaccctaatccta 32444532  T

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Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 46595848 - 46595792
Alignment:
Q  235 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46595848 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 46595792  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 30766104 - 30766053
Alignment:
Q  235 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatc 286  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  30766104 ttattatctaatcctaaactacaatgcacacaaatcatctaaaaccctaatc 30766053  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 37267599 - 37267567
Alignment:
Q  235 ttattatctaatcctaaactacaatgcaaacaa 267  Q
    |||||||||||||||||||||||||||||||||    
T  37267599 ttattatctaatcctaaactacaatgcaaacaa 37267567  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 4865124 - 4865177
Alignment:
Q  235 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcct 288  Q
    |||||||||||||||||||||||||||| |||| |  |  ||||||||||||||    
T  4865124 ttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatcct 4865177  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 55041578 - 55041525
Alignment:
Q  235 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcct 288  Q
    |||||||||||||||||||||||||||| |||| |  |  ||||||||||||||    
T  55041578 ttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatcct 55041525  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 37720087 - 37720032
Alignment:
Q  235 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctat 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37720087 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctat 37720032  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 9263713 - 9263661
Alignment:
Q  239 tatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 291  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  9263713 tatctaatcctaaactacaatgcaaacaaaacatcaaaaatcctaatcctatg 9263661  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 30441367 - 30441314
Alignment:
Q  236 tattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatccta 289  Q
    ||||||||||||||||  ||||||||| |||| || ||||||||||||| ||||    
T  30441367 tattatctaatcctaatgtacaatgcacacaacacctctaaaaccctaaaccta 30441314  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 41290053 - 41290085
Alignment:
Q  235 ttattatctaatcctaaactacaatgcaaacaa 267  Q
    |||||||||||||||||||||||||| ||||||    
T  41290053 ttattatctaatcctaaactacaatgtaaacaa 41290085  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 229 - 291
Target Start/End: Original strand, 25867300 - 25867362
Alignment:
Q  229 aaatctttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 291  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25867300 aaatccttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaattctatg 25867362  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 16961731 - 16961675
Alignment:
Q  235 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 291  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16961731 ttatcatctaatcctaaactacaatgtaaacaaaacatctaaaaccctaatcctatg 16961675  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 267
Target Start/End: Complemental strand, 29395521 - 29395483
Alignment:
Q  229 aaatctttattatctaatcctaaactacaatgcaaacaa 267  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  29395521 aaatccttattatctaatcctaaactacaatgcacacaa 29395483  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 35161958 - 35162011
Alignment:
Q  235 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcct 288  Q
    |||||||||||||||||||||||||||| |||| |  |  ||||||||||||||    
T  35161958 ttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatcct 35162011  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 17963003 - 17962971
Alignment:
Q  235 ttattatctaatcctaaactacaatgcaaacaa 267  Q
    |||||||||||||||||||||||| ||||||||    
T  17963003 ttattatctaatcctaaactacaacgcaaacaa 17962971  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 47520776 - 47520831
Alignment:
Q  236 tattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcctatg 291  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  47520776 tattatctaatcctaaactacaatataaacaaaacatctaaaaccctaatcctatg 47520831  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 7131306 - 7131357
Alignment:
Q  235 ttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatc 286  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  7131306 ttattacctaatcctaaactacaatgtaaacaaaacatctaaaaccctaatc 7131357  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 267
Target Start/End: Complemental strand, 11075296 - 11075265
Alignment:
Q  236 tattatctaatcctaaactacaatgcaaacaa 267  Q
    ||||||||||||||||||||||||||||||||    
T  11075296 tattatctaatcctaaactacaatgcaaacaa 11075265  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 1662655 - 1662597
Alignment:
Q  230 aatctttattatctaatcctaaactacaatgcaaacaaaacatctaaaaccctaatcct 288  Q
    |||| |||||||||||||||||||||||||||| |||| |  |  ||||||||||||||    
T  1662655 aatccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatcct 1662597  T

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