View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2329_low_42 (Length: 284)
Name: NF2329_low_42
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2329_low_42 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 276
Target Start/End: Original strand, 5918335 - 5918596
Alignment:
| Q |
15 |
acaaactacagaaattattttcccctttgagtcaagatgaccatgacaaactcagctattggttttgaaggctacgaaaagaggcttgagataacnnnnn |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |
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| T |
5918335 |
acaaactacagaaattattttcccctttgagtcaagatgaccatgacaaactcagctatcggttttgaaggttatgaaaagaggcttgagataacttttt |
5918434 |
T |
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| Q |
115 |
nngaaaacggtgttttctctgacccttctggattaggcctccgagcattgtccagagaccaaattgacgagattctgaaaccagcagaatgcaccattgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5918435 |
ttgaaaacggtgttttctctgacccttctggattaggcctccgagcattgtccagagaccaaattgacgagattctgaaaccagcagaatgcaccattgt |
5918534 |
T |
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| Q |
215 |
tgactcactatctaatgattatgttgattcatatgttctttccgagtcaagtttattcatct |
276 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5918535 |
tgactcactatctaatgattatgttgattcgtatgttctttccgagtcaagtttattcatct |
5918596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 274
Target Start/End: Complemental strand, 5903502 - 5903243
Alignment:
| Q |
15 |
acaaactacagaaattattttcccctttgagtcaagatgaccatgacaaactcagctattggttttgaaggctacgaaaagaggcttgagataacnnnnn |
114 |
Q |
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|||||| ||| ||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
5903502 |
acaaacaacaaaaattgttttctcctttgagtcaagatgaccatgacaaactcagctatcggttttgaaggctatgaaaagaggcttgagataacttttt |
5903403 |
T |
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| Q |
115 |
nngaaaacggtgttttctctgacccttctggattaggcctccgagcattgtccagagaccaaattgacgagattctgaaaccagcagaatgcaccattgt |
214 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5903402 |
tcgaaaacggttttttctctgaccctgctggattaggcctccgagcattgtccaaagaccaaattgacgagattctgaaaccagcagaatgcaccattgt |
5903303 |
T |
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| Q |
215 |
tgactcactatctaatgattatgttgattcatatgttctttccgagtcaagtttattcat |
274 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||| |||||||| |||||||| |
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| T |
5903302 |
tgactcactatctaatgactgtgttgattcatatgttctttctgagtcaagcttattcat |
5903243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 26 - 276
Target Start/End: Original strand, 5911712 - 5911962
Alignment:
| Q |
26 |
aaattattttcccctttgagtcaagatgaccatgacaaactcagctattggttttgaaggctacgaaaagaggcttgagataacnnnnnnngaaaacggt |
125 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||| |
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| T |
5911712 |
aaattattttcccctttgagtcaagatgaccgtgacaaactcagctatcggttttgaaggctatgaaaagaggcttgagataacttttttcgaaaatggt |
5911811 |
T |
|
| Q |
126 |
gttttctctgacccttctggattaggcctccgagcattgtccagagaccaaattgacgagattctgaaaccagcagaatgcaccattgttgactcactat |
225 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
5911812 |
tttttctctgatcctgctggattaggcctccgagcattgtccaaagaccaaattgacgagattctgaaaccagcagaatgcactattgtggactcactat |
5911911 |
T |
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| Q |
226 |
ctaatgattatgttgattcatatgttctttccgagtcaagtttattcatct |
276 |
Q |
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|||||||| | || ||||| ||||||||||| |||||||| |||||||||| |
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| T |
5911912 |
ctaatgatgacgtggattcgtatgttctttcggagtcaagcttattcatct |
5911962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 276
Target Start/End: Complemental strand, 363635 - 363374
Alignment:
| Q |
15 |
acaaactacagaaattattttcccctttgagtcaagatgaccatgacaaactcagctattggttttgaaggctacgaaaagaggcttgagataacnnnnn |
114 |
Q |
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|||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
363635 |
acaaactacaaaaattattttcccctttgattcaagatggccatgacaaactcagctatcggttttgaaggctatgaaaagaggcttgagataacttttt |
363536 |
T |
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| Q |
115 |
nngaaaacggtgttttctctgacccttctggattaggcctccgagcattgtccagagaccaaattgacgagattctgaaaccagcagaatgcaccattgt |
214 |
Q |
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|||||||||||||| ||||||||| ||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
363535 |
tcgaaaacggtgttttttctgaccctgctggattaggcttccgggcattgtccaaagaccaaattgacgagattctgaaaccagcagaatgcaccattgt |
363436 |
T |
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| Q |
215 |
tgactcactatctaatgattatgttgattcatatgttctttccgagtcaagtttattcatct |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
363435 |
tgactcactatctaatgattatgttgattcatatgttctttctgagtcaagcttattcatct |
363374 |
T |
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