View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2329_low_43 (Length: 264)
Name: NF2329_low_43
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2329_low_43 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 41389140 - 41388891
Alignment:
| Q |
1 |
acattaccaattggtaattggtaaaacaaaataaatgaaagaattaactatgccatgtaactccagcttcagtgacttcaccgttctaacattacataaa |
100 |
Q |
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| T |
41389140 |
acattaccaattggtaattggtaaaacaaaataaatgaaagaattaactatgccatgtaactccagcttcagtgacttcaccgttctaacattacataaa |
41389041 |
T |
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| Q |
101 |
tactttatcaagaaaaaattatccatcgtcgcaagtcgctattgaattgcgaaacaagaacattgtacctaaaccaaaccaaaccattttgcagcattct |
200 |
Q |
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| T |
41389040 |
tactttatcaagaaaaaattatccatcgtcgcaagtcgctattgaattgcgaaacaagaacattgtacctaaaccaa-----accattttgcagcattct |
41388946 |
T |
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| Q |
201 |
aaaagcatttcctgtgtacaattgaaggaccagattcatcgtactcggcctttgc |
255 |
Q |
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| T |
41388945 |
aaaagcatttcctgtgtacaattgaaggaccagattcatcgtactcggcctttgc |
41388891 |
T |
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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 69262 - 69210
Alignment:
| Q |
203 |
aagcatttcctgtgtacaattgaaggaccagattcatcgtactcggcctttgc |
255 |
Q |
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| T |
69262 |
aagcatttcctgtgaacaattgaagggcctgattcatcatattcagcctttgc |
69210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 37049957 - 37050009
Alignment:
| Q |
203 |
aagcatttcctgtgtacaattgaaggaccagattcatcgtactcggcctttgc |
255 |
Q |
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| T |
37049957 |
aagcatttcctgtgtactattgatggcccagattcatcatattctgcctttgc |
37050009 |
T |
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