View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2329_low_5 (Length: 534)

Name: NF2329_low_5
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2329_low_5
NF2329_low_5
[»] chr8 (25 HSPs)
chr8 (89-190)||(22610322-22610424)
chr8 (89-190)||(23884063-23884168)
chr8 (99-190)||(36732549-36732642)
chr8 (89-153)||(18834356-18834420)
chr8 (119-191)||(36305897-36305970)
chr8 (23-153)||(21399647-21399768)
chr8 (23-153)||(21794140-21794261)
chr8 (23-69)||(22345169-22345215)
chr8 (23-69)||(22356829-22356875)
chr8 (23-70)||(18834426-18834473)
chr8 (23-70)||(22208273-22208320)
chr8 (23-70)||(36732413-36732460)
chr8 (23-69)||(22258307-22258353)
chr8 (26-70)||(22483790-22483834)
chr8 (23-70)||(18816296-18816343)
chr8 (23-70)||(22610268-22610315)
chr8 (23-70)||(36306002-36306048)
chr8 (106-138)||(4380691-4380723)
chr8 (106-138)||(18816369-18816401)
chr8 (106-138)||(21514637-21514669)
chr8 (23-70)||(21514695-21514742)
chr8 (6-40)||(20532520-20532554)
chr8 (6-40)||(22418571-22418605)
chr8 (152-189)||(22966706-22966744)
chr8 (23-70)||(23884175-23884220)
[»] chr3 (39 HSPs)
chr3 (89-190)||(3527212-3527313)
chr3 (99-171)||(22841351-22841423)
chr3 (102-161)||(13522349-13522408)
chr3 (23-153)||(6156641-6156761)
chr3 (23-153)||(6159335-6159456)
chr3 (23-153)||(54875475-54875596)
chr3 (23-70)||(2841507-2841554)
chr3 (99-153)||(17684903-17684957)
chr3 (23-68)||(3527158-3527203)
chr3 (99-139)||(14442119-14442159)
chr3 (99-139)||(17669766-17669806)
chr3 (23-70)||(14442179-14442226)
chr3 (23-70)||(24547204-24547251)
chr3 (99-153)||(2841574-2841628)
chr3 (110-171)||(12151025-12151085)
chr3 (89-138)||(24549009-24549057)
chr3 (89-137)||(50755309-50755360)
chr3 (110-171)||(12155102-12155165)
chr3 (26-70)||(22841283-22841327)
chr3 (26-70)||(24548958-24549002)
chr3 (27-70)||(12917311-12917354)
chr3 (23-70)||(14152400-14152447)
chr3 (23-70)||(14520450-14520497)
chr3 (23-70)||(14641549-14641596)
chr3 (23-70)||(17208528-17208575)
chr3 (23-70)||(17669699-17669746)
chr3 (23-70)||(17684836-17684883)
chr3 (110-172)||(3160704-3160765)
chr3 (29-70)||(45803338-45803379)
chr3 (106-138)||(17208470-17208502)
chr3 (110-189)||(48631227-48631306)
chr3 (99-138)||(24547146-24547184)
chr3 (23-70)||(29907643-29907690)
chr3 (23-70)||(29948809-29948856)
chr3 (23-70)||(29997963-29998010)
chr3 (104-138)||(50350890-50350924)
chr3 (23-64)||(5215657-5215698)
chr3 (106-139)||(14520391-14520424)
chr3 (6-42)||(12386361-12386397)
[»] chr7 (39 HSPs)
chr7 (23-190)||(18570540-18570698)
chr7 (99-190)||(8930833-8930925)
chr7 (23-190)||(36300642-36300798)
chr7 (89-191)||(13744565-13744668)
chr7 (89-191)||(15700790-15700893)
chr7 (99-190)||(33556173-33556264)
chr7 (23-153)||(58414-58532)
chr7 (100-188)||(25943163-25943250)
chr7 (23-70)||(13315083-13315130)
chr7 (23-70)||(18874666-18874713)
chr7 (147-191)||(16250342-16250386)
chr7 (23-70)||(3287748-3287795)
chr7 (23-70)||(13744511-13744558)
chr7 (27-70)||(33556110-33556153)
chr7 (23-70)||(38299752-38299799)
chr7 (99-153)||(15720709-15720763)
chr7 (23-65)||(25943276-25943318)
chr7 (26-70)||(15700887-15700931)
chr7 (23-70)||(708430-708477)
chr7 (23-70)||(8488095-8488142)
chr7 (23-70)||(8513754-8513801)
chr7 (23-70)||(8930766-8930813)
chr7 (23-70)||(15575650-15575697)
chr7 (23-70)||(15700736-15700783)
chr7 (23-70)||(15720783-15720830)
chr7 (23-70)||(19195615-19195662)
chr7 (23-70)||(19283060-19283107)
chr7 (23-70)||(43276745-43276792)
chr7 (23-70)||(47095456-47095503)
chr7 (23-70)||(48212728-48212775)
chr7 (23-64)||(43745666-43745707)
chr7 (106-138)||(15575723-15575755)
chr7 (106-138)||(48212803-48212835)
chr7 (23-70)||(20252183-20252230)
chr7 (23-64)||(16250223-16250264)
chr7 (106-139)||(47095397-47095430)
chr7 (110-138)||(16186859-16186887)
chr7 (110-138)||(18874742-18874770)
chr7 (106-138)||(43745602-43745634)
[»] chr1 (21 HSPs)
chr1 (23-190)||(34392660-34392819)
chr1 (23-191)||(45499433-45499593)
chr1 (89-173)||(8306516-8306603)
chr1 (23-70)||(17901795-17901842)
chr1 (23-70)||(50544876-50544923)
chr1 (89-153)||(20588566-20588633)
chr1 (89-153)||(20593104-20593171)
chr1 (23-70)||(635005-635052)
chr1 (23-70)||(20588642-20588689)
chr1 (23-70)||(20593180-20593227)
chr1 (23-70)||(8306610-8306657)
chr1 (23-70)||(38056673-38056720)
chr1 (25-70)||(24719514-24719558)
chr1 (7-62)||(22145653-22145706)
chr1 (106-138)||(28476808-28476840)
chr1 (23-70)||(6834180-6834227)
chr1 (110-173)||(21188111-21188173)
chr1 (23-70)||(28476735-28476782)
chr1 (23-70)||(35895103-35895150)
chr1 (23-56)||(7703140-7703173)
chr1 (106-138)||(12710813-12710845)
[»] chr4 (25 HSPs)
chr4 (99-190)||(9622381-9622473)
chr4 (99-173)||(16296783-16296857)
chr4 (23-70)||(10273387-10273434)
chr4 (23-70)||(13847205-13847252)
chr4 (23-70)||(14631139-14631186)
chr4 (99-153)||(55583126-55583180)
chr4 (23-68)||(55583202-55583247)
chr4 (23-70)||(9622493-9622540)
chr4 (23-70)||(12424291-12424338)
chr4 (23-70)||(33186907-33186954)
chr4 (110-173)||(14477544-14477606)
chr4 (23-70)||(16296942-16296989)
chr4 (23-56)||(15239817-15239850)
chr4 (7-52)||(35811361-35811406)
chr4 (106-138)||(14631081-14631113)
chr4 (6-42)||(17334229-17334265)
chr4 (106-138)||(25513797-25513829)
chr4 (106-138)||(26446153-26446185)
chr4 (26-70)||(26446211-26446255)
chr4 (28-64)||(35660966-35661002)
chr4 (23-62)||(9639022-9639061)
chr4 (23-70)||(25513855-25513902)
chr4 (6-40)||(14826044-14826078)
chr4 (109-137)||(2424464-2424492)
chr4 (106-138)||(45314157-45314189)
[»] chr2 (15 HSPs)
chr2 (99-191)||(25584179-25584273)
chr2 (89-161)||(28345043-28345115)
chr2 (89-173)||(149559-149646)
chr2 (23-70)||(23801500-23801547)
chr2 (23-70)||(21315477-21315524)
chr2 (23-70)||(21335267-21335314)
chr2 (99-191)||(34491312-34491404)
chr2 (23-64)||(23610636-23610677)
chr2 (27-70)||(28344993-28345036)
chr2 (106-138)||(28652626-28652658)
chr2 (23-70)||(149502-149549)
chr2 (23-70)||(21369297-21369344)
chr2 (109-138)||(21369239-21369268)
chr2 (110-189)||(19647129-19647208)
chr2 (106-138)||(23610572-23610604)
[»] scaffold0461 (1 HSPs)
scaffold0461 (106-190)||(12379-12464)
[»] scaffold0031 (2 HSPs)
scaffold0031 (99-190)||(127411-127503)
scaffold0031 (23-70)||(127344-127391)
[»] chr6 (10 HSPs)
chr6 (110-190)||(1818846-1818927)
chr6 (23-190)||(10446106-10446268)
chr6 (23-64)||(29045281-29045322)
chr6 (23-70)||(19825487-19825534)
chr6 (23-69)||(21683076-21683122)
chr6 (106-138)||(15998835-15998867)
chr6 (23-70)||(20410513-20410560)
chr6 (23-70)||(23658093-23658140)
chr6 (110-173)||(24506193-24506255)
chr6 (106-138)||(25601401-25601433)
[»] chr5 (15 HSPs)
chr5 (89-191)||(21398700-21398806)
chr5 (99-191)||(22111870-22111962)
chr5 (23-70)||(32607317-32607364)
chr5 (112-191)||(1626998-1627077)
chr5 (23-70)||(21398645-21398692)
chr5 (23-70)||(23199208-23199255)
chr5 (110-189)||(21504034-21504114)
chr5 (89-153)||(32607371-32607438)
chr5 (23-70)||(16063755-16063802)
chr5 (23-70)||(18744878-18744925)
chr5 (26-70)||(1627071-1627115)
chr5 (106-138)||(1627142-1627174)
chr5 (109-138)||(18744820-18744849)
chr5 (106-138)||(660736-660768)
chr5 (110-138)||(23199285-23199313)
[»] scaffold0379 (2 HSPs)
scaffold0379 (99-191)||(10840-10932)
scaffold0379 (23-70)||(10951-10998)
[»] scaffold0174 (3 HSPs)
scaffold0174 (99-171)||(19769-19840)
scaffold0174 (23-70)||(19860-19907)
scaffold0174 (23-70)||(5458-5505)
[»] scaffold0004 (7 HSPs)
scaffold0004 (99-187)||(72982-73071)
scaffold0004 (99-191)||(75828-75921)
scaffold0004 (120-191)||(110216-110288)
scaffold0004 (23-70)||(75941-75988)
scaffold0004 (23-70)||(111364-111411)
scaffold0004 (23-70)||(73091-73138)
scaffold0004 (23-70)||(66073-66120)
[»] scaffold0439 (1 HSPs)
scaffold0439 (91-158)||(12236-12306)
[»] scaffold0555 (2 HSPs)
scaffold0555 (99-158)||(8814-8873)
scaffold0555 (23-70)||(8747-8794)
[»] scaffold1186 (2 HSPs)
scaffold1186 (23-70)||(2024-2071)
scaffold1186 (106-138)||(1966-1998)
[»] scaffold0061 (2 HSPs)
scaffold0061 (23-70)||(14587-14634)
scaffold0061 (23-70)||(23645-23692)
[»] scaffold0005 (3 HSPs)
scaffold0005 (23-70)||(186197-186244)
scaffold0005 (106-138)||(186270-186302)
scaffold0005 (6-40)||(13631-13665)
[»] scaffold0098 (2 HSPs)
scaffold0098 (99-153)||(40037-40091)
scaffold0098 (23-70)||(40111-40158)
[»] scaffold0676 (2 HSPs)
scaffold0676 (89-173)||(2726-2813)
scaffold0676 (23-70)||(2885-2932)
[»] scaffold1939 (1 HSPs)
scaffold1939 (110-173)||(39-102)
[»] scaffold0878 (2 HSPs)
scaffold0878 (23-70)||(3423-3470)
scaffold0878 (106-138)||(3496-3528)
[»] scaffold0853 (2 HSPs)
scaffold0853 (23-70)||(2455-2502)
scaffold0853 (109-138)||(2533-2562)
[»] scaffold0431 (1 HSPs)
scaffold0431 (23-70)||(5637-5684)
[»] scaffold0414 (2 HSPs)
scaffold0414 (23-70)||(11161-11208)
scaffold0414 (99-138)||(11228-11267)
[»] scaffold0247 (2 HSPs)
scaffold0247 (23-70)||(1080-1127)
scaffold0247 (106-191)||(969-1054)
[»] scaffold0056 (1 HSPs)
scaffold0056 (23-70)||(18279-18326)
[»] scaffold0220 (1 HSPs)
scaffold0220 (23-63)||(13960-14000)
[»] scaffold0594 (1 HSPs)
scaffold0594 (23-70)||(2251-2298)
[»] scaffold0048 (1 HSPs)
scaffold0048 (23-70)||(68727-68774)
[»] scaffold0021 (2 HSPs)
scaffold0021 (114-173)||(17019-17077)
scaffold0021 (114-173)||(26550-26608)
[»] scaffold0139 (1 HSPs)
scaffold0139 (23-64)||(23544-23585)
[»] scaffold0369 (1 HSPs)
scaffold0369 (106-138)||(15689-15721)
[»] scaffold0328 (1 HSPs)
scaffold0328 (23-63)||(18641-18681)
[»] scaffold0203 (1 HSPs)
scaffold0203 (106-138)||(18014-18046)
[»] scaffold0162 (2 HSPs)
scaffold0162 (23-55)||(23893-23925)
scaffold0162 (109-138)||(23959-23988)
[»] scaffold0730 (1 HSPs)
scaffold0730 (23-70)||(6506-6553)
[»] scaffold0505 (2 HSPs)
scaffold0505 (26-65)||(4796-4835)
scaffold0505 (23-70)||(4941-4987)
[»] scaffold0148 (1 HSPs)
scaffold0148 (27-70)||(8848-8891)
[»] scaffold0108 (1 HSPs)
scaffold0108 (23-62)||(6430-6469)
[»] scaffold0086 (1 HSPs)
scaffold0086 (23-70)||(35187-35234)
[»] scaffold0007 (1 HSPs)
scaffold0007 (23-70)||(16420-16467)
[»] scaffold0047 (1 HSPs)
scaffold0047 (6-40)||(22854-22888)
[»] scaffold0011 (1 HSPs)
scaffold0011 (6-40)||(37267-37301)
[»] scaffold0231 (1 HSPs)
scaffold0231 (106-138)||(17595-17627)
[»] scaffold0180 (1 HSPs)
scaffold0180 (6-42)||(31354-31390)


Alignment Details
Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 89 - 190
Target Start/End: Original strand, 22610322 - 22610424
Alignment:
Q  89 gggtttaacatgttgttttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaat-cattgaattaacgta 187  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  22610322 gggtttaacatgttattttgttagttttgatgttatagaaattatggttaatttgtaaaattgattgttgaaagagtaggtaatccattgaattaacgta 22610421  T
Q  188 agg 190  Q
    |||    
T  22610422 agg 22610424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 89 - 190
Target Start/End: Complemental strand, 23884168 - 23884063
Alignment:
Q  89 gggtttaacatgttgtt---ttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggt-aatcattgaattaac 184  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||| |||||||||||||||    
T  23884168 gggtttaacatgttgttcttttgttagttttgatgttatagaaattagggttaaattacacaattgattgttgaaagagtaggtaaatcattgaattaac 23884069  T
Q  185 gtaagg 190  Q
    ||||||    
T  23884068 gtaagg 23884063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 99 - 190
Target Start/End: Original strand, 36732549 - 36732642
Alignment:
Q  99 tgttgttttgttagttttgat-gttatagaaattagggttaatttgtacaattgattgttgaaagagtaggt-aatcattgaattaacgtaagg 190  Q
    ||||||||||||| ||| ||| ||||| |||||||||||||||||| | ||||||||||||||||||||||| || ||||||||||||||||||    
T  36732549 tgttgttttgttaatttagattgttattgaaattagggttaatttgcaaaattgattgttgaaagagtaggtaaaccattgaattaacgtaagg 36732642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 18834420 - 18834356
Alignment:
Q  89 gggtttaacatgttgttttgttagttttgatgttatagaaattagggttaatttgtacaattgat 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||    
T  18834420 gggtttaacatgttgttttgttagttttgatgttatagaaattagggttaaattgcaaaattgat 18834356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 36305970 - 36305897
Alignment:
Q  119 tgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggt-aatcattgaattaacgtaaggg 191  Q
    ||||||||||||||||||||||||| | | ||||||||||||||||||||| || |||||||||||||||||||    
T  36305970 tgttatagaaattagggttaatttgcaaagttgattgttgaaagagtaggtaaaccattgaattaacgtaaggg 36305897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 21399768 - 21399647
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattctnnnnnnnnnnnnnnnnnngggtttaaca---tgttgttttgttagttttgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||                  ||||||||||   |||||||||||||||||||||    
T  21399768 aaggtaagggtgggactagctttctctaataatgggttgtatgattct------------aaaaaggggtttaacatgttgttgttttgttagttttgat 21399681  T
Q  120 gttatagaaattagggttaatttgtacaattgat 153  Q
    |||||||||||||||||||| ||| | |||||||    
T  21399680 gttatagaaattagggttaaattgcaaaattgat 21399647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 21794261 - 21794140
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattctnnnnnnnnnnnnnnnnnngggtttaaca---tgttgttttgttagttttgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||                  ||||||||||   |||||||||||||||||||||    
T  21794261 aaggtaagggtgggactagctttctctaataatgggttgtatgattct------------aaaaaggggtttaacatgttgttgttttgttagttttgat 21794174  T
Q  120 gttatagaaattagggttaatttgtacaattgat 153  Q
    |||||||||||||||||||| ||| | |||||||    
T  21794173 gttatagaaattagggttaaattgcaaaattgat 21794140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 22345215 - 22345169
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattc 69  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  22345215 aaggtaagggtgggactagctttctctaataatgggttgtatgattc 22345169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 22356875 - 22356829
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattc 69  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  22356875 aaggtaagggtgggactagctttctctaataatgggttgtatgattc 22356829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 18834473 - 18834426
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||    
T  18834473 aaggtaagggtgggactagctttctctaataatggattgtatgattct 18834426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 22208320 - 22208273
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||    
T  22208320 aaggtaagggtgggactagctttctctaataatgggttgtataattct 22208273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 36732413 - 36732460
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||    
T  36732413 aaggtaagggtgtgactagctttctctaataatgggttgtataattct 36732460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 22258307 - 22258353
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattc 69  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||    
T  22258307 aaggtaagggtgagactagctttctctaataatgagttgtataattc 22258353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 22483834 - 22483790
Alignment:
Q  26 gtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||    
T  22483834 gtaagggtgggactagctttctctaataatgggttgtataattct 22483790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 18816296 - 18816343
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| |||||||||||||||| |||||||||||| |||||    
T  18816296 aaggtaagggtgggactagctttctctaaaaatgggttgtataattct 18816343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 22610268 - 22610315
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||| ||||||||||||||| |||||||||||||    
T  22610268 aaggtaagggtgggactaactttctctaataatgagttgtatgattct 22610315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 36306048 - 36306002
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||    
T  36306048 aaggtaagggtgagactagctttctctaataa-cggttgtatgattct 36306002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 4380691 - 4380723
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggtta 138  Q
    |||||||||||||||||||||||||||||||||    
T  4380691 ttgttagttttgatgttatagaaattagggtta 4380723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 18816369 - 18816401
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggtta 138  Q
    |||||||||||||||||||||||||||||||||    
T  18816369 ttgttagttttgatgttatagaaattagggtta 18816401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 21514669 - 21514637
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggtta 138  Q
    |||||||||||||||||||||||||||||||||    
T  21514669 ttgttagttttgatgttatagaaattagggtta 21514637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 21514742 - 21514695
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| |||||| |||||||||||||| ||||||| |||||    
T  21514742 aaggtaagggtgggactagatttctctaataatgagttgtataattct 21514695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 20532520 - 20532554
Alignment:
Q  6 gctgatcgattttgatgaaggtaagggtgagacta 40  Q
    |||||||||||||||| ||||||||||||||||||    
T  20532520 gctgatcgattttgattaaggtaagggtgagacta 20532554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 22418571 - 22418605
Alignment:
Q  6 gctgatcgattttgatgaaggtaagggtgagacta 40  Q
    |||||||||||||||| ||||||||||||||||||    
T  22418571 gctgatcgattttgatcaaggtaagggtgagacta 22418605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 22966744 - 22966706
Alignment:
Q  152 attgttgaaagagtaggtaa-tcattgaattaacgtaag 189  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  22966744 attgttgaaagagtaggtaaatcattgaattaacgtaag 22966706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 23884220 - 23884175
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||| | |||||||||||||||  ||||||||||||||||||    
T  23884220 aaggtaagggcgggactagctttctcta--aatgggttgtatgattct 23884175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 89 - 190
Target Start/End: Original strand, 3527212 - 3527313
Alignment:
Q  89 gggtttaacatgttgttttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaa-tcattgaattaacgta 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||  |||||||||||||||    
T  3527212 gggtttaacatgttgttttgttagttttgatgttatagaaattagggttaatttgta-gattgattgttgaaagagtaggtaagccattgaattaacgta 3527310  T
Q  188 agg 190  Q
    |||    
T  3527311 agg 3527313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 22841351 - 22841423
Alignment:
Q  99 tgttgttttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaa 171  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22841351 tgttgttttgttagttttgaggttatagaaattagggttaatttgtagaattgattgttgaaagagtaggtaa 22841423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 102 - 161
Target Start/End: Original strand, 13522349 - 13522408
Alignment:
Q  102 tgttttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaa 161  Q
    |||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||    
T  13522349 tgttttgttaattttgatgttatagaaattagggttaatttatagaattgattgttgaaa 13522408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 6156761 - 6156641
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattctnnnnnnnnnnnnnnnnnngggtttaaca---tgttgttttgttagttttgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||                  ||||||||||   |||||||||||||||||||||    
T  6156761 aaggtaagggtgggactagctttctctaataatgggttgtatgattct-------------aaaaggggtttaacatgttgttgttttgttagttttgat 6156675  T
Q  120 gttatagaaattagggttaatttgtacaattgat 153  Q
    |||||||||||||||||||| ||| | |||||||    
T  6156674 gttatagaaattagggttaaattgcagaattgat 6156641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 6159456 - 6159335
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattctnnnnnnnnnnnnnnnnnngggtttaaca---tgttgttttgttagttttgat 119  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||                  ||||||||||   |||||||||||||||||||||    
T  6159456 aaggtaagggtgagactcgctttctctaataatgggttgtatgattct------------aaaaaggggtttaacatgttgttgttttgttagttttgat 6159369  T
Q  120 gttatagaaattagggttaatttgtacaattgat 153  Q
    |||||||||||||||||||| ||| | |||||||    
T  6159368 gttatagaaattagggttaaattgcagaattgat 6159335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 54875475 - 54875596
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattctnnnnnnnnnnnnnnnnnngggtttaaca---tgttgttttgttagttttgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||                  ||||||||||   |||||||||||||||||||||    
T  54875475 aaggtaagggtgggactagctttctctaataatgggttgtatgattct------------aaaaaggggtttaacatgttgttgttttgttagttttgat 54875562  T
Q  120 gttatagaaattagggttaatttgtacaattgat 153  Q
    |||||||||||||||||||| ||| | |||||||    
T  54875563 gttatagaaattagggttaaattgcaaaattgat 54875596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 2841507 - 2841554
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  2841507 aaggtaagggtgtgactagctttctctaataatgggttgtatgattct 2841554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 17684903 - 17684957
Alignment:
Q  99 tgttgttttgttagttttgatgttatagaaattagggttaatttgtacaattgat 153  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| | |||||||    
T  17684903 tgttgttttgttagttttgatgttatagaaattagggttaaattgcaaaattgat 17684957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 3527158 - 3527203
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgatt 68  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  3527158 aaggtaagggtgggactagctttctctaataatgggttgtatgatt 3527203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 14442159 - 14442119
Alignment:
Q  99 tgttgttttgttagttttgatgttatagaaattagggttaa 139  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14442159 tgttgttttgttagttttgatgttatagaaattagggttaa 14442119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 17669766 - 17669806
Alignment:
Q  99 tgttgttttgttagttttgatgttatagaaattagggttaa 139  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  17669766 tgttgttttgttagttttgatgttatagaaattagggttaa 17669806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 14442226 - 14442179
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||    
T  14442226 aaggtaagggtgggactagctttctgtaataatgggttgtatgattct 14442179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 24547251 - 24547204
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||    
T  24547251 aaggtaaggatgagactatctttctctaataatgggttgtatgattct 24547204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 2841574 - 2841628
Alignment:
Q  99 tgttgttttgttagttttgatgttatagaaattagggttaatttgtacaattgat 153  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||    
T  2841574 tgttgttttgttagttttgatgttatagaaattagagttaaattgcagaattgat 2841628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 12151025 - 12151085
Alignment:
Q  110 tagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaa 171  Q
    ||||||||||||||||||| ||||||||||||| |  |||||||||||||||| ||||||||    
T  12151025 tagttttgatgttatagaagttagggttaattt-tcaaattgattgttgaaagtgtaggtaa 12151085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 24549009 - 24549057
Alignment:
Q  89 gggtttaacatgttgttttgttagttttgatgttatagaaattagggtta 138  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  24549009 gggtttaatatgttgttttgttagttt-gatgttatagaaattagggtta 24549057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 50755309 - 50755360
Alignment:
Q  89 gggtttaacatgttgtt---ttgttagttttgatgttatagaaattagggtt 137  Q
    |||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  50755309 gggtttaacatgttgttgctttgttagttttgatgttatagaaattagggtt 50755360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 12155102 - 12155165
Alignment:
Q  110 tagttttgatgttatagaaattagggttaatttgta--caattgattgttgaaagagtaggtaa 171  Q
    ||||||||||||||||||| |||||||||||||| |   |||||||||||||||| ||||||||    
T  12155102 tagttttgatgttatagaagttagggttaatttgcaattaattgattgttgaaagtgtaggtaa 12155165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 22841283 - 22841327
Alignment:
Q  26 gtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||    
T  22841283 gtaagggtgggactagctttctctaataatgggttgtataattct 22841327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 24548958 - 24549002
Alignment:
Q  26 gtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||    
T  24548958 gtaagggtgagactaactttatctaataatgggttgtatgattct 24549002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 12917311 - 12917354
Alignment:
Q  27 taagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||| ||||| |||||||||||||||||||||||||||||    
T  12917311 taagggtgggactaactttctctaataatgggttgtatgattct 12917354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 14152400 - 14152447
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||||||||||||||||||| ||||||| |||||    
T  14152400 aaggtaagggtgggactagctttctctaataatgagttgtatcattct 14152447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 14520497 - 14520450
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| |||||||||||| |||||||||||||||| |||||    
T  14520497 aaggtaagggtgggactagctttctttaataatgggttgtataattct 14520450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 14641549 - 14641596
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| || |||||||||||||||||||||||||| |||||    
T  14641549 aaggtaagggtgggattagctttctctaataatgggttgtataattct 14641596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 17208575 - 17208528
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||||||||||||||||||| ||||||| |||||    
T  17208575 aaggtaagggtgggactagctttctctaataatgagttgtataattct 17208528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 17669699 - 17669746
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    ||||||| | || |||||||||||||||||||||||||||||||||||    
T  17669699 aaggtaatgatgggactagctttctctaataatgggttgtatgattct 17669746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 17684836 - 17684883
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| |||||| ||||| ||||||||||||||||||||||    
T  17684836 aaggtaagggtgggactagttttctgtaataatgggttgtatgattct 17684883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 3160704 - 3160765
Alignment:
Q  110 tagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaat 172  Q
    |||||||||| |||||||||||||| |||| ||| | | ||||||||||||||||||||||||    
T  3160704 tagttttgatattatagaaattaggtttaaattgca-atttgattgttgaaagagtaggtaat 3160765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 45803338 - 45803379
Alignment:
Q  29 agggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||| ||||||||||||||||||||||||||||| |||||    
T  45803338 agggtgggactagctttctctaataatgggttgtataattct 45803379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 17208502 - 17208470
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggtta 138  Q
    |||||||||||||||||||||||||||||||||    
T  17208502 ttgttagttttgatgttatagaaattagggtta 17208470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 189
Target Start/End: Complemental strand, 48631306 - 48631227
Alignment:
Q  110 tagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaa-tcattgaattaacgtaag 189  Q
    ||||||||||||||||||| | |||||||| |||   |||||||||||||||| |||||||| ||| ||||||||| ||||    
T  48631306 tagttttgatgttatagaagtcagggttaaattgct-aattgattgttgaaagtgtaggtaattcaatgaattaacataag 48631227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 24547184 - 24547146
Alignment:
Q  99 tgttgttttgttagttttgatgttatagaaattagggtta 138  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  24547184 tgttgttttgttagttt-gatgttatagaaattagggtta 24547146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 29907690 - 29907643
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| |||||||||||| ||||| |||||||||| |||||    
T  29907690 aaggtaagggtgggactagctttctttaatattgggttgtataattct 29907643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 29948856 - 29948809
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| |||||||||||| ||||| |||||||||| |||||    
T  29948856 aaggtaagggtgggactagctttctttaatattgggttgtataattct 29948809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 29998010 - 29997963
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| |||||||||||| ||||| |||||||||| |||||    
T  29998010 aaggtaagggtgggactagctttctttaatattgggttgtataattct 29997963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 138
Target Start/End: Original strand, 50350890 - 50350924
Alignment:
Q  104 ttttgttagttttgatgttatagaaattagggtta 138  Q
    |||||||||||||||||||||||| ||||||||||    
T  50350890 ttttgttagttttgatgttatagagattagggtta 50350924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 5215698 - 5215657
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtat 64  Q
    ||||||||||||  |||||||||||||||||||| |||||||    
T  5215698 aaggtaagggtggcactagctttctctaataatgagttgtat 5215657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 14520424 - 14520391
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggttaa 139  Q
    |||||||||||||||||||| |||||||||||||    
T  14520424 ttgttagttttgatgttataaaaattagggttaa 14520391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 12386397 - 12386361
Alignment:
Q  6 gctgatcgattttgatgaaggtaagggtgagactagc 42  Q
    |||||||||||||||| |||||||||||| |||||||    
T  12386397 gctgatcgattttgattaaggtaagggtgggactagc 12386361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 23 - 190
Target Start/End: Complemental strand, 18570698 - 18570540
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattctnnnnnnnnnnnnnnnnnngggtttaacat---gttgttttgttagttttgat 119  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||                  |||||||||||   ||||||||||||||||||||    
T  18570698 aaggtaagggtgagactagctttctctaataatgggttgtaagattctagaaag------------gggtttaacatattgttgttttgttagttttgat 18570611  T
Q  120 gttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaatcattgaattaacgtaagg 190  Q
    ||||||||| ||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  18570610 gttatagaagttatggttaatttgtagaattgattgttgaaagagtaggtaaccattgaattaacgtaagg 18570540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 99 - 190
Target Start/End: Original strand, 8930833 - 8930925
Alignment:
Q  99 tgttgttttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggt-aatcattgaattaacgtaagg 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| || ||||||||||||| ||||    
T  8930833 tgttgttttgttagttttgatgttatagaaattagggttaatttgcaaaattgattgttgaaagagtaggtaaaccattgaattaacgaaagg 8930925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 23 - 190
Target Start/End: Original strand, 36300642 - 36300798
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattctnnnnnnnnnnnnnnnnnngggtttaacatgttgttttgttagttttgatgtt 122  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||                  |||||||||||||| ||||||||||||||||| |    
T  36300642 aaggtaaaggtgagactagctttctctaataatgggttgtatgattctaaaaag------------gggtttaacatgttattttgttagttttgatgat 36300729  T
Q  123 atagaaattagggttaatttgtacaattgattgttgaaagagtaggtaat-cattgaattaacgtaagg 190  Q
    |||| |||||||||||| ||| | |||| | ||||||||||||||||||| ||||||||||||||||||    
T  36300730 ataggaattagggttaaattgcaaaattaactgttgaaagagtaggtaatccattgaattaacgtaagg 36300798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 89 - 191
Target Start/End: Original strand, 13744565 - 13744668
Alignment:
Q  89 gggtttaacatgttgttttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc-attgaattaacgta 187  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||| | | ||||| |||||||||| |||||| | ||||| ||||||||    
T  13744565 gggtttaacatgttgttttgttatttttaatgttatagaaattagggttaatttgcaaagttgatcgttgaaagagaaggtaaactattgatttaacgta 13744664  T
Q  188 aggg 191  Q
    ||||    
T  13744665 aggg 13744668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 89 - 191
Target Start/End: Original strand, 15700790 - 15700893
Alignment:
Q  89 gggtttaacatgttgtt-ttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc-attgaattaacgt 186  Q
    ||||||||||||| ||| ||||||||||| |||||||||||||||||||||| ||| | ||||| ||||||||||||||||||| | |||||||||||||    
T  15700790 gggtttaacatgtagttgttgttagttttaatgttatagaaattagggttaa-ttgcaaaattggttgttgaaagagtaggtaaactattgaattaacgt 15700888  T
Q  187 aaggg 191  Q
    |||||    
T  15700889 aaggg 15700893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 99 - 190
Target Start/End: Original strand, 33556173 - 33556264
Alignment:
Q  99 tgttgttttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaa--tcattgaattaacgtaagg 190  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||| | |||||||||||||||||||||||||   ||||||||||||||||||    
T  33556173 tgttgttttgttagttt-gatgttatagaaattagggttaa-ttgaaaaattgattgttgaaagagtaggtaaatccattgaattaacgtaagg 33556264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 58414 - 58532
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattctnnnnnnnnnnnnnnnnnngggtttaacatgttgttttgttagttttgatgtt 122  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||    
T  58414 aaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaag------------gggtttaacatgttgttttgttagttttgatgtt 58501  T
Q  123 atagaaattagggttaatttgtacaattgat 153  Q
    | ||||||||||||||| ||| | |||||||    
T  58502 aaagaaattagggttaaattgcaaaattgat 58532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 25943250 - 25943163
Alignment:
Q  100 gttgttttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggt-aatcattgaattaacgtaa 188  Q
    |||||||||| ||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| || ||||||||||| ||||    
T  25943250 gttgttttgt-agttttgatgttatagaaattagggttaa-ttgcaaaattgattgttgaaagagtaggtaaaccattgaattaatgtaa 25943163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 13315083 - 13315130
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||    
T  13315083 aaggtaagggtgagactatctttctctaataatgggttgtatgattct 13315130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 18874666 - 18874713
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  18874666 aaggtaagggtgagactagctttctctaataatgggttgtataattct 18874713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 16250342 - 16250386
Alignment:
Q  147 aattgattgttgaaagagtaggtaatcattgaattaacgtaaggg 191  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  16250342 aattgattgttgaaagagtaggtaaccattgaattaacgtaaggg 16250386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 3287795 - 3287748
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||    
T  3287795 aaggtaagggtgagactagctttctctaataataggttgtataattct 3287748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 13744511 - 13744558
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||    
T  13744511 aaggtaagggtgggactagctttctctaataatgggttttatgattct 13744558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 33556110 - 33556153
Alignment:
Q  27 taagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  33556110 taagggtgggactagctttctctaataatgggttgtatgattct 33556153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 38299799 - 38299752
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||    
T  38299799 aaggtaagggtgggactagctttctctaataatgggttgtataattct 38299752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 15720763 - 15720709
Alignment:
Q  99 tgttgttttgttagttttgatgttatagaaattagggttaatttgtacaattgat 153  Q
    |||||||||||||||||||||||||||||||||| |||||| ||| | |||||||    
T  15720763 tgttgttttgttagttttgatgttatagaaattatggttaaattgcaaaattgat 15720709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 25943318 - 25943276
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatg 65  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  25943318 aaggtaagggtgggactagctttctctaataatgggttgtatg 25943276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 15700887 - 15700931
Alignment:
Q  26 gtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||    
T  15700887 gtaagggggagactagctttctctaataatgagttgtatgattct 15700931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 708430 - 708477
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||| ||||| ||||||||||||||||||||||||||||| |||||    
T  708430 aaggtaggggtgggactagctttctctaataatgggttgtataattct 708477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 8488095 - 8488142
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  8488095 aaggtaagggtgggactaactttctctaataatgggttgtataattct 8488142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 8513754 - 8513801
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  8513754 aaggtaagggtgggactaactttctctaataatgggttgtataattct 8513801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 8930766 - 8930813
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| |||||  ||||||||||||||||||||||||||||    
T  8930766 aaggtaagggtgggactacatttctctaataatgggttgtatgattct 8930813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 15575650 - 15575697
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||| ||||| ||||||||||||||||||||||||||||| |||||    
T  15575650 aaggtaggggtgggactagctttctctaataatgggttgtataattct 15575697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 15700736 - 15700783
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    ||||||||| ||| ||||||||||||||||||||||||||||| ||||    
T  15700736 aaggtaaggatgatactagctttctctaataatgggttgtatggttct 15700783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 15720830 - 15720783
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    ||||||| |||| |||||||||||||| ||||||||||||||||||||    
T  15720830 aaggtaaaggtgggactagctttctctcataatgggttgtatgattct 15720783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 19195662 - 19195615
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||||||||||||||||||| ||||||| |||||    
T  19195662 aaggtaagggtgggactagctttctctaataatgagttgtataattct 19195615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 19283107 - 19283060
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||||||||| |||||||||| |||||||||||| |||||    
T  19283107 aaggtaagggtgagactaactttctctaagaatgggttgtataattct 19283060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 43276745 - 43276792
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  43276745 aaggtaagggtgggactaactttctctaataatgggttgtataattct 43276792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 47095503 - 47095456
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| |||||||||||||||||||||||||| || |||||    
T  47095503 aaggtaagggtgggactagctttctctaataatgggttgaataattct 47095456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 48212728 - 48212775
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||||||||||| |||||| ||||||||||||||    
T  48212728 aaggtaagggtgtgactagctttctccaataataggttgtatgattct 48212775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 43745707 - 43745666
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtat 64  Q
    |||||||||||| ||||||||||||||||||||| |||||||    
T  43745707 aaggtaagggtgggactagctttctctaataatgagttgtat 43745666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 15575723 - 15575755
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggtta 138  Q
    |||||||||||||||||||||||||||||||||    
T  15575723 ttgttagttttgatgttatagaaattagggtta 15575755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 48212803 - 48212835
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggtta 138  Q
    |||||||||||||||||||||||||||||||||    
T  48212803 ttgttagttttgatgttatagaaattagggtta 48212835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 20252183 - 20252230
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||  ||||||||||||||||||||| ||||||| |||||    
T  20252183 aaggtaagggtaggactagctttctctaataatgagttgtataattct 20252230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 16250223 - 16250264
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtat 64  Q
    |||||||||||| ||||| ||||||||||||||| |||||||    
T  16250223 aaggtaagggtgggactaactttctctaataatgagttgtat 16250264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 47095430 - 47095397
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggttaa 139  Q
    ||||||| ||||||||||||||||||||||||||    
T  47095430 ttgttaggtttgatgttatagaaattagggttaa 47095397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 138
Target Start/End: Complemental strand, 16186887 - 16186859
Alignment:
Q  110 tagttttgatgttatagaaattagggtta 138  Q
    |||||||||||||||||||||||||||||    
T  16186887 tagttttgatgttatagaaattagggtta 16186859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 138
Target Start/End: Original strand, 18874742 - 18874770
Alignment:
Q  110 tagttttgatgttatagaaattagggtta 138  Q
    |||||||||||||||||||||||||||||    
T  18874742 tagttttgatgttatagaaattagggtta 18874770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 43745634 - 43745602
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggtta 138  Q
    |||||||||||||||||||||||||||| ||||    
T  43745634 ttgttagttttgatgttatagaaattagagtta 43745602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 23 - 190
Target Start/End: Complemental strand, 34392819 - 34392660
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattctnnnnnnnnnnnnnnnnnngggtttaacatgttgtt---ttgttagttttgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||                  |||||||||||||||||   ||||||||||||||    
T  34392819 aaggtaagggtgtgactagctttctctaataatgggttgtatgattctaaaaag------------gggtttaacatgttgttgttttgttagttttgat 34392732  T
Q  120 gttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaat-cattgaattaacgtaagg 190  Q
    |||||||||||||||||||| ||| | |||||||||||||||||||||||||| ||||||||||||||||||    
T  34392731 gttatagaaattagggttaaattgcaaaattgattgttgaaagagtaggtaatccattgaattaacgtaagg 34392660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 191
Target Start/End: Complemental strand, 45499593 - 45499433
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattctnnnnnnnnnnnnnnnnnngggtttaacatgttgtt---ttgttagttttgat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||   ||||||||||| |     
T  45499593 aaggtaagggtgagactagctttctctaataatgggttgtatgattctataaag------------gggtttaacatgttgttgttttgttagttttaac 45499506  T
Q  120 gttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc-attgaattaacgtaaggg 191  Q
    |||||||||||||||||||| ||| | | ||||||||||||||||||||||| | ||||| ||||||||||||    
T  45499505 gttatagaaattagggttaaattgcaaagttgattgttgaaagagtaggtaaactattgatttaacgtaaggg 45499433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 8306603 - 8306516
Alignment:
Q  89 gggtttaacatgttgt---tttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc 173  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||||      || |||||||||||||||||||||||||||    
T  8306603 gggtttaacatgttgtcgttttgttagttttgatgttatagaaattagggtttgaaattaaaattgattgttgaaagagtaggtaatc 8306516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 17901795 - 17901842
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  17901795 aaggtaagggtgagactagctttctctaataatgggttgtataattct 17901842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 50544923 - 50544876
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  50544923 aaggtaagggtgagactagctttctctaataatgggttgtataattct 50544876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 20588633 - 20588566
Alignment:
Q  89 gggtttaacatgtt---gttttgttagttttgatgttatagaaattagggttaatttgtacaattgat 153  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||||||||| ||| | |||||||    
T  20588633 gggtttaacatgtttttgttttgttagttttgatgttatagaaattagggttaaattgcaaaattgat 20588566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 20593171 - 20593104
Alignment:
Q  89 gggtttaacatgtt---gttttgttagttttgatgttatagaaattagggttaatttgtacaattgat 153  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||||||||| ||| | |||||||    
T  20593171 gggtttaacatgtttttgttttgttagttttgatgttatagaaattagggttaaattgcaaaattgat 20593104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 635005 - 635052
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||    
T  635005 aaggtaagggtgagactagctttctctaataataggttgtataattct 635052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 20588689 - 20588642
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||    
T  20588689 aaggtaagggtgggattagctttctctaataatgggttgtatgattct 20588642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 20593227 - 20593180
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||    
T  20593227 aaggtaagggtgggattagctttctctaataatgggttgtatgattct 20593180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 8306657 - 8306610
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||| ||| ||||||||||||||||||||||||||||| |||||    
T  8306657 aaggtaagagtgggactagctttctctaataatgggttgtataattct 8306610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 38056673 - 38056720
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||||||||||||| ||||||||||||| |||||    
T  38056673 aaggtaagggtgggactagctttctctagtaatgggttgtataattct 38056720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 24719514 - 24719558
Alignment:
Q  25 ggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||    
T  24719514 ggtaagggtg-gactagctttctctaataatgggttgtataattct 24719558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 22145653 - 22145706
Alignment:
Q  7 ctgatcgattttgatgaaggtaagggtgagactagctttctctaataatgggttgt 62  Q
    |||||||||||  || |||||||||||| ||||| |||||||||||||||||||||    
T  22145653 ctgatcgattt--attaaggtaagggtgggactaactttctctaataatgggttgt 22145706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 28476808 - 28476840
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggtta 138  Q
    |||||||||||||||||||||||||||||||||    
T  28476808 ttgttagttttgatgttatagaaattagggtta 28476840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 6834227 - 6834180
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||| |||||||| |||||||||||||||||||| ||||||| |||||    
T  6834227 aaggcaagggtgatactagctttctctaataatgagttgtataattct 6834180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 21188111 - 21188173
Alignment:
Q  110 tagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc 173  Q
    ||||||||||||||||||| ||||| |||| ||| | | |||||||||||||| ||||||||||    
T  21188111 tagttttgatgttatagaagttaggtttaaattgca-atttgattgttgaaagtgtaggtaatc 21188173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 28476735 - 28476782
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| |||||| |||||||||||||| ||||||| |||||    
T  28476735 aaggtaagggtgggactagatttctctaataatgagttgtataattct 28476782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 35895150 - 35895103
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||| ||||  |||||||||| ||||||||||||||||||||||||    
T  35895150 aaggtatgggtaggactagctttatctaataatgggttgtatgattct 35895103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 7703173 - 7703140
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatg 56  Q
    |||||||||||| |||||||||||||||||||||    
T  7703173 aaggtaagggtgggactagctttctctaataatg 7703140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 12710845 - 12710813
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggtta 138  Q
    ||||||||||||||||||||||||||| |||||    
T  12710845 ttgttagttttgatgttatagaaattaaggtta 12710813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 99 - 190
Target Start/End: Complemental strand, 9622473 - 9622381
Alignment:
Q  99 tgttgttttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaat-cattgaattaacgtaagg 190  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||| ||||||||||||||||||    
T  9622473 tgttgttttgttagttttgatgttatagaaattagggttaaattgcaaaattgattgttgaaagagtaggtaatccattgaattaacgtaagg 9622381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 16296857 - 16296783
Alignment:
Q  99 tgttgttttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc 173  Q
    |||||||||||||||||||||||||||||||||||||||      || |||||||||||||||||||||||||||    
T  16296857 tgttgttttgttagttttgatgttatagaaattagggtttgaaattaaaattgattgttgaaagagtaggtaatc 16296783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 10273434 - 10273387
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  10273434 aaggtaagggtgggactagctttctctaataatgggttgtatgattct 10273387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 13847252 - 13847205
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  13847252 aaggtaagggtgagactagctttctctaataatgggttgtataattct 13847205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 14631186 - 14631139
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  14631186 aaggtaagggtgagactagctttctctaataatgggttgtataattct 14631139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 55583180 - 55583126
Alignment:
Q  99 tgttgttttgttagttttgatgttatagaaattagggttaatttgtacaattgat 153  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| | |||||||    
T  55583180 tgttgttttgttagttttgatgttatagaaattagggttaaattgcaaaattgat 55583126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 55583247 - 55583202
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgatt 68  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
T  55583247 aaggtaagggtgggactagctttctctaataatgggttgtatgatt 55583202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 9622540 - 9622493
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||    
T  9622540 aaggtaagggtgggactagctttctctaataatgggttgtctgattct 9622493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 12424291 - 12424338
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||    
T  12424291 aaggtaagggtgggactagctttctctaataatgggttgtataattct 12424338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 33186954 - 33186907
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||    
T  33186954 aaggtaggggtgagactagctttctctaataatgggttgtataattct 33186907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 14477606 - 14477544
Alignment:
Q  110 tagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc 173  Q
    ||||||||||||||||||| |||||||||| ||| | | |||||||||||||| ||||||||||    
T  14477606 tagttttgatgttatagaagttagggttaaattg-aaatttgattgttgaaagtgtaggtaatc 14477544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 16296989 - 16296942
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||||||||||||||||||| ||||||| |||||    
T  16296989 aaggtaagggtgggactagctttctctaataatgagttgtataattct 16296942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 15239817 - 15239850
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatg 56  Q
    ||||||||||||||||||||||||||||||||||    
T  15239817 aaggtaagggtgagactagctttctctaataatg 15239850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 35811361 - 35811406
Alignment:
Q  7 ctgatcgattttgatgaaggtaagggtgagactagctttctctaat 52  Q
    ||||||||||||||| |||||||||||| ||||| |||||||||||    
T  35811361 ctgatcgattttgattaaggtaagggtgggactaactttctctaat 35811406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 14631113 - 14631081
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggtta 138  Q
    |||||||||||||||||||||||||||||||||    
T  14631113 ttgttagttttgatgttatagaaattagggtta 14631081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 17334265 - 17334229
Alignment:
Q  6 gctgatcgattttgatgaaggtaagggtgagactagc 42  Q
    |||||||||||||||| ||||||||||||||||||||    
T  17334265 gctgatcgattttgattaaggtaagggtgagactagc 17334229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 25513829 - 25513797
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggtta 138  Q
    |||||||||||||||||||||||||||||||||    
T  25513829 ttgttagttttgatgttatagaaattagggtta 25513797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 26446185 - 26446153
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggtta 138  Q
    |||||||||||||||||||||||||||||||||    
T  26446185 ttgttagttttgatgttatagaaattagggtta 26446153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 26446255 - 26446211
Alignment:
Q  26 gtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    ||||||||  ||||||||||||||||||||||||||||| |||||    
T  26446255 gtaagggtaggactagctttctctaataatgggttgtataattct 26446211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 35661002 - 35660966
Alignment:
Q  28 aagggtgagactagctttctctaataatgggttgtat 64  Q
    ||||||| |||||||||||||||||||||||||||||    
T  35661002 aagggtgggactagctttctctaataatgggttgtat 35660966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 9639061 - 9639022
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgt 62  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  9639061 aaggtaagggtgggactagctttctctaataatgagttgt 9639022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 25513902 - 25513855
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    ||||||| |||| ||||||||||||||||||||| ||||||| |||||    
T  25513902 aaggtaatggtgggactagctttctctaataatgagttgtataattct 25513855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 14826078 - 14826044
Alignment:
Q  6 gctgatcgattttgatgaaggtaagggtgagacta 40  Q
    |||||||||||||||| ||||||||||||||||||    
T  14826078 gctgatcgattttgattaaggtaagggtgagacta 14826044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 137
Target Start/End: Original strand, 2424464 - 2424492
Alignment:
Q  109 ttagttttgatgttatagaaattagggtt 137  Q
    |||||||||||||||||||||||||||||    
T  2424464 ttagttttgatgttatagaaattagggtt 2424492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 45314157 - 45314189
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggtta 138  Q
    |||||||||||||||||||||| ||||||||||    
T  45314157 ttgttagttttgatgttatagagattagggtta 45314189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 25584179 - 25584273
Alignment:
Q  99 tgttgttttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaa--tcattgaattaacgtaaggg 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  | || |||||||||||||||    
T  25584179 tgttgttttgttagttttgatgttatagaaattagggttaatttgtagaattgattgttgaaagagtaggtaaatttatcgaattaacgtaaggg 25584273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 28345043 - 28345115
Alignment:
Q  89 gggtttaacatgttgttttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaa 161  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||    
T  28345043 gggtttaacatgttgttttgttagtttcgatgttatagaaattagggttaatttgcaaaattgattgttgaaa 28345115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 149559 - 149646
Alignment:
Q  89 gggtttaacatgttgt---tttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc 173  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||||      || |||||||||||||||||||||||||||    
T  149559 gggtttaacatgttgtcgttttgttagttttgatgttatagaaattagggtttgaaattaaaattgattgttgaaagagtaggtaatc 149646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 23801547 - 23801500
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  23801547 aaggtaagggtgggactagctttctctaataatgggttgtatgattct 23801500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 21315477 - 21315524
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||    
T  21315477 aaggtaagggtgggactagctttctctaataatgggttgtataattct 21315524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 21335267 - 21335314
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||    
T  21335267 aaggtaagggtgggactagctttctctaataatgggttgtataattct 21335314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 34491312 - 34491404
Alignment:
Q  99 tgttgttttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaa--tcattgaattaacgtaaggg 191  Q
    ||||||||||| ||||||||||||||| || |||||||||| ||| | ||||||||||| |||||||| ||||   |||||||||||||||||||    
T  34491312 tgttgttttgt-agttttgatgttataaaatttagggttaa-ttgcaaaattgattgttaaaagagtaagtaaatccattgaattaacgtaaggg 34491404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 23610677 - 23610636
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtat 64  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  23610677 aaggtaagggtgggactagctttctctaataatgggttgtat 23610636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 28344993 - 28345036
Alignment:
Q  27 taagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||| ||||||||||||||||||||||| |||||||||||    
T  28344993 taagggtgtgactagctttctctaataatgggctgtatgattct 28345036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 28652626 - 28652658
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggtta 138  Q
    |||||||||||||||||||||||||||||||||    
T  28652626 ttgttagttttgatgttatagaaattagggtta 28652658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 149502 - 149549
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    ||||||||||||  |||||||||||||||||||| ||||||| |||||    
T  149502 aaggtaagggtggaactagctttctctaataatgagttgtataattct 149549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 21369344 - 21369297
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||| |||||||||||| |||||||||||| |||||    
T  21369344 aaggtaagggtgggacaagctttctctaacaatgggttgtataattct 21369297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 138
Target Start/End: Complemental strand, 21369268 - 21369239
Alignment:
Q  109 ttagttttgatgttatagaaattagggtta 138  Q
    ||||||||||||||||||||||||||||||    
T  21369268 ttagttttgatgttatagaaattagggtta 21369239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 189
Target Start/End: Complemental strand, 19647208 - 19647129
Alignment:
Q  110 tagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaat-cattgaattaacgtaag 189  Q
    ||||||||||  ||||||| |||||||||| ||| | |||||||||||||||  ||||||||| || ||||||||| ||||    
T  19647208 tagttttgattgtatagaagttagggttaaattgca-aattgattgttgaaaatgtaggtaatccaatgaattaacataag 19647129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 23610604 - 23610572
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggtta 138  Q
    ||||| |||||||||||||||||||||||||||    
T  23610604 ttgtttgttttgatgttatagaaattagggtta 23610572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 106 - 190
Target Start/End: Complemental strand, 12464 - 12379
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggt-aatcattgaattaacgtaagg 190  Q
    |||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| |||||||||||||||||||||    
T  12464 ttgttagttttgatgttatagaaattagggtttatttgcaaaattgattgttgaaagagtaggtaaatcattgaattaacgtaagg 12379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 99 - 190
Target Start/End: Original strand, 127411 - 127503
Alignment:
Q  99 tgttgttttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggt-aatcattgaattaacgtaagg 190  Q
    ||||||||||||||||||||||||||||| |||||||||| |||| | ||||||||||||||||||||||| || ||||||||||||||||||    
T  127411 tgttgttttgttagttttgatgttatagagattagggttactttgcaaaattgattgttgaaagagtaggtaaaccattgaattaacgtaagg 127503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 127344 - 127391
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||    
T  127344 aaggtaagggtgggactagctttctctaataatggattgtatgattct 127391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 1818927 - 1818846
Alignment:
Q  110 tagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaa-tcattgaattaacgtaagg 190  Q
    |||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||| |||||||||||||||||||    
T  1818927 tagttttgatgttatagaaattagggttaaattgcaaaattgattgttgaaagagtaggtaattcattgaattaacgtaagg 1818846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 190
Target Start/End: Complemental strand, 10446268 - 10446106
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattctnnnnnnnnnnnnnnnnnngggtttaacatgttgtt---ttgttagttttgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||                  |||||||||||||||||   |||||||||| |||    
T  10446268 aaggtaagggtgggactagctttctctaataatgggttgtatgattctaaaaag------------gggtttaacatgttgttgttttgttagtttcgat 10446181  T
Q  120 gttatagaaattagggttaatttgtacaattgattgttgaaag---agtaggt-aatcattgaattaacgtaagg 190  Q
    |||||||||||||||||||||||| | ||||||||||||||||   ||||||| || ||||||||||||||||||    
T  10446180 gttatagaaattagggttaatttgcaaaattgattgttgaaagatcagtaggtaaagcattgaattaacgtaagg 10446106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 29045322 - 29045281
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtat 64  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  29045322 aaggtaagggtgagactagctttctctaataatgggttgtat 29045281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 19825487 - 19825534
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||    
T  19825487 aaggtaagggtgagactagctttctctaataatgggttgcataattct 19825534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 21683076 - 21683122
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattc 69  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||    
T  21683076 aaggtaagggtgggactagctttctctaataatgggttgtataattc 21683122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 15998867 - 15998835
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggtta 138  Q
    |||||||||||||||||||||||||||||||||    
T  15998867 ttgttagttttgatgttatagaaattagggtta 15998835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 20410513 - 20410560
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    ||||||||||||  | |||||||||||||||||||||||||| |||||    
T  20410513 aaggtaagggtggaaatagctttctctaataatgggttgtataattct 20410560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 23658140 - 23658093
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||||||||| |||||||| |||||||| |||||    
T  23658140 aaggtaagggtgggactagctttccctaataataggttgtataattct 23658093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 24506193 - 24506255
Alignment:
Q  110 tagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc 173  Q
    ||||||||||||||||||| ||||| |||| ||||| | || ||||||||||| ||||||||||    
T  24506193 tagttttgatgttatagaagttaggtttaaattgta-atttaattgttgaaagtgtaggtaatc 24506255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 25601401 - 25601433
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggtta 138  Q
    ||||||||||| |||||||||||||||||||||    
T  25601401 ttgttagttttcatgttatagaaattagggtta 25601433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 9e-25; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 89 - 191
Target Start/End: Original strand, 21398700 - 21398806
Alignment:
Q  89 gggtttaacatgtt---gttttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaa--tcattgaattaa 183  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||||||||| ||| | ||||| |||||||||||||||||||   |||||||||||    
T  21398700 gggtttaacatgtttttgttttgttagttttgatgttatagaaattagggttaa-ttgcaaaattggttgttgaaagagtaggtaaatccattgaattaa 21398798  T
Q  184 cgtaaggg 191  Q
    ||||||||    
T  21398799 cgtaaggg 21398806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 99 - 191
Target Start/End: Complemental strand, 22111962 - 22111870
Alignment:
Q  99 tgttgttttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc-attgaattaacgtaaggg 191  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||||||||||||||||||| | || |||||||||||||||    
T  22111962 tgttgttttgttagttttgatgttatagaaattagggttaa-ttgcaaaattggttgttgaaagagtaggtaaacaatcgaattaacgtaaggg 22111870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 32607317 - 32607364
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||    
T  32607317 aaggtaagggtgggactagctttctctaataatgggttgtatgattct 32607364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 191
Target Start/End: Original strand, 1626998 - 1627077
Alignment:
Q  112 gttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggt-aatcattgaattaacgtaaggg 191  Q
    ||||||||||| || ||||||| ||| ||||| | ||||||||||||||||||||||| || |||||||||||||||||||    
T  1626998 gttttgatgttgta-aaattagagtttatttgcaaaattgattgttgaaagagtaggtaaaccattgaattaacgtaaggg 1627077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 21398645 - 21398692
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||    
T  21398645 aaggtaagggtgggattagctttctctaataatgggttgtatgattct 21398692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 23199208 - 23199255
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||    
T  23199208 aaggtaagggtgggactagctttctctaataatgggttgtataattct 23199255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 189
Target Start/End: Complemental strand, 21504114 - 21504034
Alignment:
Q  110 tagttttgatgttatagaaattagggtt-aatttgtacaattgattgttgaaagagtaggtaat-cattgaattaacgtaag 189  Q
    |||||||||||||||||||||||||||| |||||| | |||| |||||||||||||||||| || || ||||||||| ||||    
T  21504114 tagttttgatgttatagaaattagggttaaatttgca-aattcattgttgaaagagtaggtgatccaatgaattaacataag 21504034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 32607371 - 32607438
Alignment:
Q  89 gggtttaacatgtt---gttttgttagttttgatgttatagaaattagggttaatttgtacaattgat 153  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||| ||||| ||| | |||||||    
T  32607371 gggtttaacatgttgttgttttgttagttttgatgttatagaaattagagttaaattgcaaaattgat 32607438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 16063802 - 16063755
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  16063802 aaggtaagggtgggactacctttctctaataatgggttgtataattct 16063755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 18744925 - 18744878
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  18744925 aaggtaagggtgggactaactttctctaataatgggttgtataattct 18744878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 1627071 - 1627115
Alignment:
Q  26 gtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    ||||||||| ||||||||||||||||||||| ||||||| |||||    
T  1627071 gtaagggtgggactagctttctctaataatgagttgtataattct 1627115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 1627142 - 1627174
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggtta 138  Q
    |||||||||||||||||||||||||||||||||    
T  1627142 ttgttagttttgatgttatagaaattagggtta 1627174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 138
Target Start/End: Complemental strand, 18744849 - 18744820
Alignment:
Q  109 ttagttttgatgttatagaaattagggtta 138  Q
    ||||||||||||||||||||||||||||||    
T  18744849 ttagttttgatgttatagaaattagggtta 18744820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 660768 - 660736
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggtta 138  Q
    |||||||||||||||||||||||||| ||||||    
T  660768 ttgttagttttgatgttatagaaatttgggtta 660736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 138
Target Start/End: Original strand, 23199285 - 23199313
Alignment:
Q  110 tagttttgatgttatagaaattagggtta 138  Q
    |||||||||||||||||||||||||||||    
T  23199285 tagttttgatgttatagaaattagggtta 23199313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 99 - 191
Target Start/End: Complemental strand, 10932 - 10840
Alignment:
Q  99 tgttgttttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc-attgaattaacgtaaggg 191  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||||||||| ||||||||| | |||||||||| |||||||    
T  10932 tgttgttttgttagttttgatgttatagaaattagggttaa-ttgcaaaattggttgttgaaaaagtaggtaaactattgaattaatgtaaggg 10840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 10998 - 10951
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||    
T  10998 aaggtaagggtggaactagctttctctaataatgggttgtatgattct 10951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 19840 - 19769
Alignment:
Q  99 tgttgttttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| | ||||| |||||||||||||||||||    
T  19840 tgttgttttgttagttttgatgttatagaaattagggttaa-ttgcaaaattggttgttgaaagagtaggtaa 19769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 19907 - 19860
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||  |||||| ||||||||||||||||||||||||||||    
T  19907 aaggtaagggtaggactagatttctctaataatgggttgtatgattct 19860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 5505 - 5458
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||| ||||||||||||||| ||||||| |||||    
T  5505 aaggtaagggtgggactacctttctctaataatgagttgtataattct 5458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 73071 - 72982
Alignment:
Q  99 tgttgttttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaa-tcattgaattaacgta 187  Q
    ||||||||| |||||||| ||||||||  |||||||||||||||| | | |||||||||||||||||||||||  |||||||||||||||    
T  73071 tgttgttttattagtttttatgttataagaattagggttaatttgcaaagttgattgttgaaagagtaggtaagccattgaattaacgta 72982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 99 - 191
Target Start/End: Complemental strand, 75921 - 75828
Alignment:
Q  99 tgttgttttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc-attgaattaacgtaaggg 191  Q
    ||||||||| |||||||||||||||||  |||||||| ||||||| | | ||||||||||||||||||||||| | ||||| ||||||||||||    
T  75921 tgttgttttattagttttgatgttataagaattagggataatttgcaaagttgattgttgaaagagtaggtaaactattgagttaacgtaaggg 75828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 110288 - 110216
Alignment:
Q  120 gttatagaaattagggttaatttgtacaattgattgttgaaagagtaggt-aatcattgaattaacgtaaggg 191  Q
    |||||||||||||||||| ||||| | |||||||| |||||||||||||| || |||||||||||||||||||    
T  110288 gttatagaaattagggtttatttgcaaaattgattattgaaagagtaggtaaaccattgaattaacgtaaggg 110216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 75988 - 75941
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||    
T  75988 aaggtaagggtgggactagctttctccaataatgggttgtatgattct 75941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 111411 - 111364
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||    
T  111411 aaggtaagggtggggctagctttctctaataatgggttgtatgattct 111364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 73138 - 73091
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||| ||||||||||||||| |||||||||||||    
T  73138 aaggtaagggtgggactaactttctctaataatgagttgtatgattct 73091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 66073 - 66120
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| |||||| ||||| |||||||||||||||| |||||    
T  66073 aaggtaagggtgggactagatttctttaataatgggttgtataattct 66120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0439 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 91 - 158
Target Start/End: Complemental strand, 12306 - 12236
Alignment:
Q  91 gtttaacatgttg---ttttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttg 158  Q
    |||||||||||||   ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  12306 gtttaacatgttgaagttttgttagttttgatgttatagaaattaaggttaatttgtagaattgattgttg 12236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 99 - 158
Target Start/End: Original strand, 8814 - 8873
Alignment:
Q  99 tgttgttttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttg 158  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||    
T  8814 tgttgttttgttagttttgatgttatagaaattagggttaatttttagaattgactgttg 8873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 8747 - 8794
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  8747 aaggtaagggtgagactagcttactctaataatgggttgtatgattct 8794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1186 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold1186
Description:

Target: scaffold1186; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 2071 - 2024
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  2071 aaggtaagggtgagactagctttctctaataatgggttgtataattct 2024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1186; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 1998 - 1966
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggtta 138  Q
    |||||||||||||||||||||||||||||||||    
T  1998 ttgttagttttgatgttatagaaattagggtta 1966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 14587 - 14634
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  14587 aaggtaagggtgagactagctttctctaataatgggttgtataattct 14634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 23645 - 23692
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  23645 aaggtaagggtgagactagctttctctaataatgggttgtataattct 23692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 186197 - 186244
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  186197 aaggtaagggtgagactagctttctctaataatgggttgtataattct 186244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 186270 - 186302
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggtta 138  Q
    |||||||||||||||||||||||||||||||||    
T  186270 ttgttagttttgatgttatagaaattagggtta 186302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 13631 - 13665
Alignment:
Q  6 gctgatcgattttgatgaaggtaagggtgagacta 40  Q
    |||||||||||||||| ||||||||||||||||||    
T  13631 gctgatcgattttgattaaggtaagggtgagacta 13665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 40091 - 40037
Alignment:
Q  99 tgttgttttgttagttttgatgttatagaaattagggttaatttgtacaattgat 153  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| | |||||||    
T  40091 tgttgttttgttagttttgatgttatagaaattagggttaaattgcagaattgat 40037  T

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Target: scaffold0098; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 40158 - 40111
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    ||||||||| || ||||| |||||||||||||||||||||||||||||    
T  40158 aaggtaaggatgcgactaactttctctaataatgggttgtatgattct 40111  T

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Target: scaffold0676 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0676
Description:

Target: scaffold0676; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 2813 - 2726
Alignment:
Q  89 gggtttaacatgttgt---tttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc 173  Q
    ||||||||||||||||   ||||||| |||||||||||||||||||||||||      || |||||||||||||||||||||||||||    
T  2813 gggtttaacatgttgtcgttttgttacttttgatgttatagaaattagggtttgaaattaaaattgattgttgaaagagtaggtaatc 2726  T

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Target: scaffold0676; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 2932 - 2885
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||    
T  2932 aaggtaagggtgggactagctttctctaataatgggttgtataattct 2885  T

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Target: scaffold1939 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1939
Description:

Target: scaffold1939; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 102 - 39
Alignment:
Q  110 tagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc 173  Q
    ||||||||||||||||||| ||||||||||  |  | |||||||||||||||||||||||||||    
T  102 tagttttgatgttatagaagttagggttaaaattgaaaattgattgttgaaagagtaggtaatc 39  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 3423 - 3470
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||    
T  3423 aaggtaagggtgggactagctttctctaataatgcgttgtatgattct 3470  T

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Target: scaffold0878; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 3496 - 3528
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggtta 138  Q
    |||||||||||||||||||||||||||||||||    
T  3496 ttgttagttttgatgttatagaaattagggtta 3528  T

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Target: scaffold0853 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 2455 - 2502
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||    
T  2455 aaggtaagggtgggactagctttctctaataatgggttgtataattct 2502  T

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Target: scaffold0853; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 138
Target Start/End: Original strand, 2533 - 2562
Alignment:
Q  109 ttagttttgatgttatagaaattagggtta 138  Q
    ||||||||||||||||||||||||||||||    
T  2533 ttagttttgatgttatagaaattagggtta 2562  T

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Target: scaffold0431 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 5684 - 5637
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||    
T  5684 aaggtaagggtgggactagctttctctaataatgggttgtataattct 5637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 11161 - 11208
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||    
T  11161 aaggtaaggatgggactagctttctctaataatgggttgtatgattct 11208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 99 - 138
Target Start/End: Original strand, 11228 - 11267
Alignment:
Q  99 tgttgttttgttagttttgatgttatagaaattagggtta 138  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  11228 tgttgttttgttagttttgatgttatataaattagggtta 11267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 1127 - 1080
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||    
T  1127 aaggtaagggtgagactagctttctctaataatggattgtataattct 1080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 1054 - 969
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggt-aatcattgaattaacgtaaggg 191  Q
    ||||||||||||||||| ||||||||| |||||| ||| | ||||||||||| ||| ||||||| ||| || |||||||||||||||    
T  1054 ttgttagttttgatgttttagaaattatggttaa-ttgcaaaattgattgttaaaatagtaggtaaattatcgaattaacgtaaggg 969  T

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Target: scaffold0056 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 18326 - 18279
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||    
T  18326 aaggtaagggtgtgactagctttctctaataatgggttgtataattct 18279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 14000 - 13960
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgta 63  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  14000 aaggtaagggtgggactagctttctctaataatgggttgta 13960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 2298 - 2251
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| |||||||||||| |||||||||||||||| |||||    
T  2298 aaggtaagggtgggactagctttctataataatgggttgtataattct 2251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 68727 - 68774
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| ||||| ||||||||||||||||||| |||||||||    
T  68727 aaggtaagggtgggactacctttctctaataatgggttatatgattct 68774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 17077 - 17019
Alignment:
Q  114 tttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc 173  Q
    |||||| |||||||||||||| |||||||| | | |||||||||||||||||||||||||    
T  17077 tttgatattatagaaattaggtttaatttgca-atttgattgttgaaagagtaggtaatc 17019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 114 - 173
Target Start/End: Complemental strand, 26608 - 26550
Alignment:
Q  114 tttgatgttatagaaattagggttaatttgtacaattgattgttgaaagagtaggtaatc 173  Q
    |||||| |||||||||||||| |||||||| | | |||||||||||||||||||||||||    
T  26608 tttgatattatagaaattaggtttaatttgca-atttgattgttgaaagagtaggtaatc 26550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 23585 - 23544
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtat 64  Q
    |||||||||||  |||||||||||||||||||||||||||||    
T  23585 aaggtaagggtaggactagctttctctaataatgggttgtat 23544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 15689 - 15721
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggtta 138  Q
    |||||||||||||||||||||||||||||||||    
T  15689 ttgttagttttgatgttatagaaattagggtta 15721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 18641 - 18681
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgta 63  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  18641 aaggtaagggtgggactagctttctctaataatgagttgta 18681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0203 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 18014 - 18046
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggtta 138  Q
    |||||||||||||||||||||||||||||||||    
T  18014 ttgttagttttgatgttatagaaattagggtta 18046  T

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Target: scaffold0162 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0162
Description:

Target: scaffold0162; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 23893 - 23925
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataat 55  Q
    |||||||||||||||||||||||||||||||||    
T  23893 aaggtaagggtgagactagctttctctaataat 23925  T

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Target: scaffold0162; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 138
Target Start/End: Original strand, 23959 - 23988
Alignment:
Q  109 ttagttttgatgttatagaaattagggtta 138  Q
    ||||||||||||||||||||||||||||||    
T  23959 ttagttttgatgttatagaaattagggtta 23988  T

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Target: scaffold0730 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0730
Description:

Target: scaffold0730; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 6506 - 6553
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    ||||||| || | ||||| |||||||||||||||||||||||||||||    
T  6506 aaggtaaaggcgggactacctttctctaataatgggttgtatgattct 6553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 4835 - 4796
Alignment:
Q  26 gtaagggtgagactagctttctctaataatgggttgtatg 65  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  4835 gtaaggatgagactagctctctctaataatgggttgtatg 4796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 4987 - 4941
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||||||| |||||||||||||||||||| |||||||| |||||    
T  4987 aaggtaagggtgggactagctttctctaataat-ggttgtataattct 4941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 8891 - 8848
Alignment:
Q  27 taagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    |||||||| |||||||||| ||||||||||| ||||||||||||    
T  8891 taagggtgggactagctttatctaataatggattgtatgattct 8848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 6469 - 6430
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgt 62  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  6469 aaggtaagggtaagactagctttctctaataatgagttgt 6430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 35187 - 35234
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    ||||||||||||  |||||||||| ||||||||||||||||| |||||    
T  35187 aaggtaagggtggtactagctttccctaataatgggttgtataattct 35234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 16420 - 16467
Alignment:
Q  23 aaggtaagggtgagactagctttctctaataatgggttgtatgattct 70  Q
    ||||||||||||||| || |||| |||||||||||||||||| |||||    
T  16420 aaggtaagggtgagattaactttatctaataatgggttgtataattct 16467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 22888 - 22854
Alignment:
Q  6 gctgatcgattttgatgaaggtaagggtgagacta 40  Q
    |||||||||||||||| ||||||||||||||||||    
T  22888 gctgatcgattttgattaaggtaagggtgagacta 22854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 37267 - 37301
Alignment:
Q  6 gctgatcgattttgatgaaggtaagggtgagacta 40  Q
    |||||||||||||||| ||||||||||||||||||    
T  37267 gctgatcgattttgattaaggtaagggtgagacta 37301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 138
Target Start/End: Original strand, 17595 - 17627
Alignment:
Q  106 ttgttagttttgatgttatagaaattagggtta 138  Q
    |||||||||||| ||||||||||||||||||||    
T  17595 ttgttagttttgctgttatagaaattagggtta 17627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 31354 - 31390
Alignment:
Q  6 gctgatcgattttgatgaaggtaagggtgagactagc 42  Q
    |||||||||||||||| |||||||||||| |||||||    
T  31354 gctgatcgattttgattaaggtaagggtgggactagc 31390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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