View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2329_low_56 (Length: 239)
Name: NF2329_low_56
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2329_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 5390875 - 5390666
Alignment:
| Q |
18 |
acaaggaacgttgatggccatgacagtagccattcaccacaaaattgttagaactggaatttattatgctgaatggtattaagaaaagccaaaagattat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5390875 |
acaaggaacgttgatggccatgacagtagccattcaccacaaaattgttagaactggaatttattatgctgaatggtattaagaaaagccaaaagattat |
5390776 |
T |
|
| Q |
118 |
atgtgctatcatagtgaagtatgagtagcctgtgtctaatggcttgagaatgatgtagtgctatgtcaataatgcatctgcttactattgaacatcctct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5390775 |
atgtgctatcatagtgaagtatgagtagcctgtgtctaatggcttgagaatgatgtagtgctatgtcaataatgcatctgcttactattgaacttcctct |
5390676 |
T |
|
| Q |
218 |
taagaataat |
227 |
Q |
| |
|
|||||||||| |
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|
| T |
5390675 |
taagaataat |
5390666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 5399205 - 5399060
Alignment:
| Q |
18 |
acaaggaacgttgatggccatgacagtagccattcaccacaaaattgttagaactggaatttattatgctgaatggtattaagaaaagccaaaagattat |
117 |
Q |
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|||| ||||||| ||||||||||||||||||||| |||| |||||| || || ||||||| |||| |||||||||||| ||||||||| ||||| |||| |
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| T |
5399205 |
acaaagaacgttcatggccatgacagtagccattaaccaaaaaattatttgagttggaattgattaagctgaatggtatcaagaaaagcaaaaaggttat |
5399106 |
T |
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| Q |
118 |
atgtgctatcatagtgaagtatgagtagcctgtgtctaatggcttg |
163 |
Q |
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|||||| |||||||||| |||||||||| |||||||||||||||| |
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| T |
5399105 |
gtgtgctctcatagtgaattatgagtagcttgtgtctaatggcttg |
5399060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 5352209 - 5352086
Alignment:
| Q |
18 |
acaaggaacgttgatggccatgacagtagccattcaccacaaaattgttagaactggaatttattatgctgaatggtattaagaaaagccaaaagattat |
117 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| ||||| |||||||||| ||| ||||||||||||| || ||||||||| |||||||||||||||||||| |
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| T |
5352209 |
acaacgaacgttgatggccaagacagtagcctttcacaacaaaattgtgagagctggaatttattaagcagaatggtataaagaaaagccaaaagattat |
5352110 |
T |
|
| Q |
118 |
atgtgctatcatagtgaagtatga |
141 |
Q |
| |
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|||||| |||||||||| ||||| |
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| T |
5352109 |
gtgtgctttcatagtgaattatga |
5352086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 5410321 - 5410162
Alignment:
| Q |
18 |
acaaggaacgttgatggccatgacagtagccattcaccacaaaattgttagaactggaatttattatgctgaatggtattaagaaaagccaaaagattat |
117 |
Q |
| |
|
|||| ||| ||| ||||||||||||||||||||| |||| ||| || || || |||||| | |||| |||||||||||| ||||||||| |||||| ||| |
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| T |
5410321 |
acaaagaatgttcatggccatgacagtagccattgaccaaaaacttatttgagctggaaatgattaagctgaatggtataaagaaaagcaaaaagactat |
5410222 |
T |
|
| Q |
118 |
atgtgctatcatagtgaagtatgagtagcctgtgtctaatggcttgagaatgatgtagtg |
177 |
Q |
| |
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|||||| |||||||||| ||||||||| |||| ||||||||||||| ||||||| |||| |
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|
| T |
5410221 |
gtgtgctctcatagtgaattatgagtaggctgtatctaatggcttgataatgatgaagtg |
5410162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 5426172 - 5426317
Alignment:
| Q |
18 |
acaaggaacgttgatggccatgacagtagccattcaccacaaaattgttagaactggaatttattatgctgaatggtattaagaaaagccaaaagattat |
117 |
Q |
| |
|
|||| ||||||| |||||| |||||||||||||| |||| |||| | || || |||||||| |||| |||||||||||| ||||||||| ||||| ||| |
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| T |
5426172 |
acaaagaacgttcatggccttgacagtagccattgaccaaaaaaatatttgagctggaattgattaagctgaatggtatcaagaaaagcaaaaaggttaa |
5426271 |
T |
|
| Q |
118 |
atgtgctatcatagtgaagtatgagtagcctgtgtctaatggcttg |
163 |
Q |
| |
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|||||| |||| ||||| |||||||||| |||||||||||||||| |
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| T |
5426272 |
gtgtgctctcatcgtgaattatgagtagcttgtgtctaatggcttg |
5426317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 5500075 - 5499951
Alignment:
| Q |
18 |
acaaggaacgttgatggccatgacagtagccattcaccacaaaattgttagaactggaatttattatgctgaatggtattaagaaaagccaaaagattat |
117 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||||||| || |||||||||| || ||||||||| ||||| |||||||| ||||| |
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|
| T |
5500075 |
acaaggaacgttcatggccaagacagtagccattcaccacaaaattgttagtgcttgaatttattaagcagaatggtatcaagaacagccaaaatattat |
5499976 |
T |
|
| Q |
118 |
atgtgctatcatagtgaagtatgag |
142 |
Q |
| |
|
|||| |||||||||| |||||| |
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|
| T |
5499975 |
gaatgctctcatagtgaattatgag |
5499951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 5376555 - 5376432
Alignment:
| Q |
18 |
acaaggaacgttgatggccatgacagtagccattcaccacaaaattgttagaactggaatttattatgctgaatggtattaagaaaagccaaaagattat |
117 |
Q |
| |
|
|||||| |||||||||||| |||||| |||||||| || |||||| |||| ||||||||||| ||||||| | || |||||||||||||| ||||| |
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|
| T |
5376555 |
acaaggcacgttgatggcctagacagttgccattcagcaaaaaattattagtgctggaatttatggagctgaatagcataaagaaaagccaaaaaattat |
5376456 |
T |
|
| Q |
118 |
atgtgctatcatagtgaagtatga |
141 |
Q |
| |
|
||||||| |||||||||| ||||| |
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|
| T |
5376455 |
atgtgctctcatagtgaattatga |
5376432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 5348869 - 5348956
Alignment:
| Q |
53 |
accacaaaattgttagaactggaatttattatgctgaatggtattaagaaaagccaaaagattatatgtgctatcatagtgaagtatg |
140 |
Q |
| |
|
|||| |||||| |||||||||||||| ||||| ||||||||||| ||||||| ||||| |||||| ||| || |||||||||| |||| |
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|
| T |
5348869 |
accaaaaaattattagaactggaattgattattctgaatggtataaagaaaatccaaaggattatgtgtactctcatagtgaattatg |
5348956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 20326733 - 20326617
Alignment:
| Q |
25 |
acgttgatggccatgacagtagccattcaccacaaaattgttagaactggaatttattatgctgaatggtattaagaaaagccaaaagattatatgtgct |
124 |
Q |
| |
|
|||||||||||| |||||| |||||||| || |||||| |||| ||||||||||| ||||||| | || |||||||||||||| |||||||||||| |
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|
| T |
20326733 |
acgttgatggcctcgacagttgccattcagcaaaaaattattagtgctggaatttatggagctgaatagcataaagaaaagccaaaaaattatatgtgct |
20326634 |
T |
|
| Q |
125 |
atcatagtgaagtatga |
141 |
Q |
| |
|
|||||||||| ||||| |
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|
| T |
20326633 |
ctcatagtgaattatga |
20326617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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