View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2329_low_59 (Length: 239)
Name: NF2329_low_59
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2329_low_59 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 25415238 - 25414999
Alignment:
| Q |
1 |
atgaacacttatacattagatataaacacaaaactagttgcagtttactacaatatggggcaacattgatgtcacgttgtttgacttgaaggatcagttg |
100 |
Q |
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| T |
25415238 |
atgaacacttatacattagatataaacacaaaactagttgcagtttactacaatgtgggacaacattgatgtcacgctgtttgacttgaaggatcggttg |
25415139 |
T |
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| Q |
101 |
aaccacgttaacgatt-gtctcaactataaagacacaaaaagattggacaatgttgtaattgttctgtggaaattgtaatattcaatgtatgttgttgtt |
199 |
Q |
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| T |
25415138 |
aaccacgttaatggtcagtctcaactataaagacacaaaaagattggacaatgttgtaattgttttgttgaaattgtaatattcaatgtatgttgttgtt |
25415039 |
T |
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| Q |
200 |
ggctcatctagtttccttctacacgcaagtcactattatc |
239 |
Q |
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| T |
25415038 |
ggctcatctagtttccttctacacgcaagtcactattatc |
25414999 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 35375838 - 35375897
Alignment:
| Q |
1 |
atgaacacttatacattagatataaacacaaaactagttgcagtttactacaatatgggg |
60 |
Q |
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| T |
35375838 |
atgaacaattatccagtagatatgaacactaaactagatgcagtgtactacaatatgggg |
35375897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 27452947 - 27452898
Alignment:
| Q |
151 |
tgttgtaattgttctgtggaaattgtaatattcaatgtatgttgttgttg |
200 |
Q |
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| T |
27452947 |
tgttgtaattgtattgttgaaattgttatgttcaatgtatgttgttgttg |
27452898 |
T |
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