View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2329_low_69 (Length: 221)

Name: NF2329_low_69
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2329_low_69
NF2329_low_69
[»] chr8 (8 HSPs)
chr8 (10-221)||(2556735-2556947)
chr8 (10-221)||(2566561-2566776)
chr8 (20-221)||(2551125-2551327)
chr8 (37-215)||(2543658-2543837)
chr8 (23-218)||(2534211-2534407)
chr8 (15-221)||(1831841-1832048)
chr8 (15-221)||(1866284-1866491)
chr8 (102-158)||(2546828-2546884)


Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 2556947 - 2556735
Alignment:
Q  10 aataaaataaaacattaattagatagacaagagacatttggaaaagtatttctaactgttccatgagcatttctacaaaaaa-tgaagtcatttttcctg 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2556947 aataaaataaaacattaattagatagacaagagacatttggaaaagtatttctaactgttccatgagcatttctacaaaaaaatgaagtcatttttcctg 2556848  T
Q  109 cttgagtagctacaatgttattttgatccaatagaatgtcgaaacaaccagaggagctacaatttaaattaacagctatcttgctagcagaagttccagt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2556847 cttgagtagctacaatgttattttgatccaatagaatgtcgaaacaaccagaggagctacaatttaaattaacagctatcttgctagcagaagttccggt 2556748  T
Q  209 aaatcctcgatat 221  Q
    |||||||||||||    
T  2556747 aaatcctcgatat 2556735  T

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Target: chr8; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 2566776 - 2566561
Alignment:
Q  10 aataaaataaaacattaat---tagatagacaagagacatttggaaaagtatttctaactgttccatgagcatttctacaaaaaa-tgaagtcatttttc 105  Q
    ||||||||||||||||| |   ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  2566776 aataaaataaaacattattaactagataggcaagagacatttggaaaagtatttctaactgttccatgagcatttctacaaaaaaatgaagtcttttttc 2566677  T
Q  106 ctgcttgagtagctacaatgttattttgatccaatagaatgtcgaaacaaccagaggagctacaatttaaattaacagctatcttgctagcagaagttcc 205  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2566676 ctgcttgagtagctacaatgttattttgatccaatagaatattgaaacaaccaggggagctacaatttaaattaacagctatcttgctagcagaagttcc 2566577  T
Q  206 agtaaatcctcgatat 221  Q
    | ||||||||||||||    
T  2566576 aataaatcctcgatat 2566561  T

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Target: chr8; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 2551327 - 2551125
Alignment:
Q  20 aacattaattagatagacaagagacatttggaaaagtatttctaactgttccatgagcatttctacaaaaa-atgaagtcatttttcctgcttgagtagc 118  Q
    |||||||||||||||| |||| |||| |||||| ||||||||||||| ||||||||||||||||||||||| | |||||| | ||||||| ||||| ||     
T  2551327 aacattaattagataggcaagggacaattggaatagtatttctaactattccatgagcatttctacaaaaagaggaagtcttctttcctggttgagcaga 2551228  T
Q  119 tacaatgttattttgatccaatagaatgtcgaaacaaccagaggagctacaatttaaattaacagctatcttgctagcagaagttccagtaaatcctcga 218  Q
    |||||||||||||||||| |||||||| |  ||||||||||| || ||||| ||||||| ||  ||||| |  |||  ||||||||| ||||||||||||    
T  2551227 tacaatgttattttgatctaatagaatcttaaaacaaccagaagaactacactttaaatcaattgctatatcactataagaagttccggtaaatcctcga 2551128  T
Q  219 tat 221  Q
    |||    
T  2551127 tat 2551125  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 37 - 215
Target Start/End: Complemental strand, 2543837 - 2543658
Alignment:
Q  37 caagagacatttggaaaagtatttctaactgttccatgagcatttctacaaaaa-atgaagtcatttttcctgcttgagtagctacaatgttattttgat 135  Q
    |||| ||||||||||| |||||||||| | |||||||| |||||| |||||||| | |||| | | ||||||| ||||| ||  |||||||| ||||| |    
T  2543837 caagggacatttggaacagtatttctagcagttccatgggcatttgtacaaaaagaagaagccttctttcctggttgagcagaaacaatgttgttttgtt 2543738  T
Q  136 ccaatagaatgtcgaaacaaccagaggagctacaatttaaattaacagctatcttgctagcagaagttccagtaaatcct 215  Q
    |||||| ||||||  |||||||||| |||||||||||||| | || |||||    ||||||||||||||| |||||||||    
T  2543737 ccaataaaatgtcataacaaccagaagagctacaatttaactgaatagctaagccgctagcagaagttccggtaaatcct 2543658  T

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Target: chr8; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 218
Target Start/End: Complemental strand, 2534407 - 2534211
Alignment:
Q  23 attaattagatagacaagagacatttggaaaagtatttctaactgttccatgagcatttctacaaaaa-atgaagtcatttttcctgcttgagtagctac 121  Q
    ||||||| ||||  |||| || |||||||| |||||||||| | |||||||| |||||| |||||||| | |||| |   ||| ||| ||||| ||  ||    
T  2534407 attaatttgataagcaagggatatttggaacagtatttctagcagttccatgggcatttgtacaaaaagaagaagccgccttttctggttgagcagaaac 2534308  T
Q  122 aatgttattttgatccaatagaatgtcgaaacaaccagaggagctacaatttaaattaacagctatcttgctagcagaagttccagtaaatcctcga 218  Q
    |||||| ||||| ||||||| ||||||  |||||||||| |||||||||||||| | || |||||    ||||||||||||||| ||||||||||||    
T  2534307 aatgttgttttgttccaataaaatgtcataacaaccagaagagctacaatttaactgaatagctaagccgctagcagaagttccggtaaatcctcga 2534211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 1832048 - 1831841
Alignment:
Q  15 aataaaacattaattagatagacaagagacatttggaaaagtatttctaactgttccatgagcatttctacaa--aaaatgaagtcatttttcctgcttg 112  Q
    |||||||||||| |||  ||  |||| |||| |||||| ||||||| || | ||||||||||||||| ||||   | ||| ||||  || |||||| |||    
T  1832048 aataaaacattacttaactaagcaagtgacacttggaatagtatttgtagcggttccatgagcatttttacactgagaat-aagtttttgttcctggttg 1831950  T
Q  113 agtagctacaatgttattttgatccaatagaatgtcgaaacaaccagaggagctacaatttaaattaacagctatcttgctagcagaagttccagtaaat 212  Q
    || ||  ||||| || |||||||||||| |||||| |   |||||||| |||| ||||||||| | || |||||  | | |||| |||||||||||||||    
T  1831949 agcagagacaattttgttttgatccaattgaatgttggttcaaccagatgagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaat 1831850  T
Q  213 cctcgatat 221  Q
    |||||||||    
T  1831849 cctcgatat 1831841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 1866491 - 1866284
Alignment:
Q  15 aataaaacattaattagatagacaagagacatttggaaaagtatttctaactgttccatgagcatttctacaa--aaaatgaagtcatttttcctgcttg 112  Q
    |||||||||||| |||  ||  |||| |||| |||||| ||||||| || | ||||||||||||||| ||||   | ||| ||||  || |||||| |||    
T  1866491 aataaaacattacttaactaagcaagtgacacttggaatagtatttgtagcggttccatgagcatttttacactgagaat-aagtttttgttcctggttg 1866393  T
Q  113 agtagctacaatgttattttgatccaatagaatgtcgaaacaaccagaggagctacaatttaaattaacagctatcttgctagcagaagttccagtaaat 212  Q
    || ||  ||||| || |||||||||||| |||||| |   |||||||| |||| ||||||||| | || |||||  | | |||| |||||||||||||||    
T  1866392 agcagagacaattttgttttgatccaattgaatgttggttcaaccagatgagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaat 1866293  T
Q  213 cctcgatat 221  Q
    |||||||||    
T  1866292 cctcgatat 1866284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 2546884 - 2546828
Alignment:
Q  102 tttcctgcttgagtagctacaatgttattttgatccaatagaatgtcgaaacaacca 158  Q
    ||||||| ||||| ||  ||||||| ||||||||||||||||||||  |||||||||    
T  2546884 tttcctgattgagaagagacaatgtcattttgatccaatagaatgttcaaacaacca 2546828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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