View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2329_low_71 (Length: 208)
Name: NF2329_low_71
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2329_low_71 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 2509856 - 2510023
Alignment:
| Q |
1 |
taatcatccacagttatttaaactacctctacgcaatgaatgtacaactaggaggagctcagaatcatttatatcaaactttttagaaaagtttgatgtt |
100 |
Q |
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| T |
2509856 |
taatcatccacagttatttaaactacctctacgcaatgaatgtacaactaggaggagctcagaatcatttatatcaaactttttagaaaagtttgatgtt |
2509955 |
T |
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| Q |
101 |
tgtttgtaaactttttcgttgtatccaacgattgcatttaatactataaaattgatctacacgtaaat |
168 |
Q |
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| T |
2509956 |
tgtttgtaaactttttcgttgtatccaacgattgcatttaatactataaaattgatctacacgtaaat |
2510023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 2510306 - 2510342
Alignment:
| Q |
169 |
tataaaaaacccatattaattaaaatcattcaatatt |
205 |
Q |
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| T |
2510306 |
tataaaaaacccatattaattaaaatcattcaatatt |
2510342 |
T |
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