View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2329_low_8 (Length: 505)

Name: NF2329_low_8
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2329_low_8
NF2329_low_8
[»] chr2 (4 HSPs)
chr2 (125-383)||(45345368-45345626)
chr2 (382-491)||(45345236-45345345)
chr2 (18-128)||(45345776-45345880)
chr2 (46-132)||(45341419-45341505)
[»] chr5 (2 HSPs)
chr5 (131-250)||(33361652-33361771)
chr5 (151-250)||(33543249-33543351)
[»] chr8 (3 HSPs)
chr8 (46-105)||(28302576-28302634)
chr8 (291-340)||(30827744-30827793)
chr8 (303-340)||(40609865-40609902)
[»] chr7 (1 HSPs)
chr7 (284-358)||(34190042-34190116)
[»] chr3 (3 HSPs)
chr3 (270-373)||(1374119-1374222)
chr3 (291-367)||(9579487-9579563)
chr3 (297-340)||(20545415-20545458)
[»] chr1 (2 HSPs)
chr1 (294-373)||(34591153-34591232)
chr1 (282-374)||(47144702-47144794)


Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 125 - 383
Target Start/End: Complemental strand, 45345626 - 45345368
Alignment:
Q  125 tcacgtatgcattcagtttaaacttggcacctcacaaactccaagctgatctcttaatttttggaacacatcaagtttcaacggtttggtcataatatca 224  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45345626 tcacatatgcattcagtttaaacttggcacctcacaaactccaagctgatctcttaatttttggaacacatcaagtttcaacggtttggtcataatatca 45345527  T
Q  225 gctacttgatttcttgtgttacaatggaccagcttcaccacttcttctttagtgagatctctcaagaaatggaaccttacatctatatgtttacttctac 324  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45345526 gctacttgatttcttgtgttacaatggaccagtttcaccacttcttctttagtgagatctctcaagaaatggaaccttacatctatatgtttacttctac 45345427  T
Q  325 catgcatgactggatttttggataatttaattgttgaactgttgtcacacatagtaaca 383  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45345426 catgcatgactggattttaggataatttaattgttgaactgttgtcacacatagtaaca 45345368  T

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Target: chr2; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 382 - 491
Target Start/End: Complemental strand, 45345345 - 45345236
Alignment:
Q  382 caatctccaacacccttctcatccacacacattggcaagcacaagaggaggctgccacaaactctgcctcagtggtggacaatgttacaacaggctgctt 481  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45345345 caatctccaacacccttctcatccacacacattggctagcacaagaggaggctgccacaaactctgcctcagtggtggacaatgttacaacaggctgctt 45345246  T
Q  482 ctttgatgcc 491  Q
    ||||||||||    
T  45345245 ctttgatgcc 45345236  T

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Target: chr2; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 45345880 - 45345776
Alignment:
Q  18 aggtatgactgttagagttttgtggaattggaatgaaacaactaagtttattgaataacatagaggtggtatatatagccttacatgataagaaggaaaa 117  Q
    ||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45345880 aggtatgactgttagagttttgtggaat------gaaacaactaagtttattgaataacatagaggtggtatatatagccttacatgataagaaggaaaa 45345787  T
Q  118 gttcaactcac 128  Q
    |||||||||||    
T  45345786 gttcaactcac 45345776  T

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Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 45341505 - 45341419
Alignment:
Q  46 tggaatgaaacaactaagtttattgaataacatagaggtggtatatatagccttacatgataagaaggaaaagttcaactcacgtat 132  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  45341505 tggaatgaaaaaactaagtttattgaataacatagaggtggcatatatagccttacatgagaagaaggaaaagttcaactcacgtat 45341419  T

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Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 131 - 250
Target Start/End: Original strand, 33361652 - 33361771
Alignment:
Q  131 atgcattcagtttaaacttggcacctcacaaactccaagctgatctcttaatttttggaacacatcaagtttcaacggtttggtcataatatcagctact 230  Q
    ||||||||| |||||| |||||||||||||||||||||| ||||||||| |||| || || ||||||||| |||||||||| |||| |||||||||||||    
T  33361652 atgcattcaatttaaatttggcacctcacaaactccaagttgatctcttgatttatgaaatacatcaagtgtcaacggtttagtcacaatatcagctact 33361751  T
Q  231 tgatttcttgtgttacaatg 250  Q
    ||||| ||||||||||||||    
T  33361752 tgattgcttgtgttacaatg 33361771  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 151 - 250
Target Start/End: Complemental strand, 33543351 - 33543249
Alignment:
Q  151 gcacctcacaaactccaagctgatctcttaatttttggaacacatcaagtttcaac---ggtttggtcataatatcagctacttgatttcttgtgttaca 247  Q
    |||||||| |||||| ||| ||||||||| |||| ||||| ||||||||| |||||   |||||||||| ||||||||||||| |||| |||||||||||    
T  33543351 gcacctcagaaactctaagttgatctcttgatttatggaatacatcaagtgtcaacaacggtttggtcacaatatcagctactcgattgcttgtgttaca 33543252  T
Q  248 atg 250  Q
    |||    
T  33543251 atg 33543249  T

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Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 28302576 - 28302634
Alignment:
Q  46 tggaatgaaacaactaagtttattgaataacatagaggtggtatatatagccttacatga 105  Q
    |||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  28302576 tggaatgaaa-aactaactttattgaataacatagaggtggcatatatagccttacatga 28302634  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 30827744 - 30827793
Alignment:
Q  291 aaatggaaccttacatctatatgtttacttctaccatgcatgactggatt 340  Q
    ||||| || ||||||||||||||||||||| | |||||||| ||||||||    
T  30827744 aaatgaaatcttacatctatatgtttactttttccatgcataactggatt 30827793  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 340
Target Start/End: Original strand, 40609865 - 40609902
Alignment:
Q  303 acatctatatgtttacttctaccatgcatgactggatt 340  Q
    |||||||||||||| | |||||||||||||||||||||    
T  40609865 acatctatatgtttgcatctaccatgcatgactggatt 40609902  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 284 - 358
Target Start/End: Complemental strand, 34190116 - 34190042
Alignment:
Q  284 tctcaagaaatggaaccttacatctatatgtttacttctaccatgcatgactggatttttggataatttaattgt 358  Q
    |||||| ||||| ||||| ||||| |||||||| ||||| |||||||  ||||||||||| ||||||||||||||    
T  34190116 tctcaaaaaatgaaacctgacatcaatatgtttgcttcttccatgcaaaactggattttttgataatttaattgt 34190042  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 373
Target Start/End: Complemental strand, 1374222 - 1374119
Alignment:
Q  270 tctttagtgagatctctcaagaaatggaaccttacatctatatgtttacttctaccatgcatgactggatttttggataatttaattgttgaactgttgt 369  Q
    |||||| | ||||| | |||||| |||||||| ||||| || ||||| ||||| || ||||| || ||||||||||| || |||||||| |||||||| |    
T  1374222 tctttaattagatcacacaagaagtggaacctcacatcgatgtgtttgcttcttccgtgcataacaggatttttggacaacttaattgtggaactgttat 1374123  T
Q  370 caca 373  Q
    ||||    
T  1374122 caca 1374119  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 367
Target Start/End: Original strand, 9579487 - 9579563
Alignment:
Q  291 aaatggaaccttacatctatatgtttacttctaccatgcatgactggatttttggataatttaattgttgaactgtt 367  Q
    ||||| ||||| ||||| || ||||||||||| ||||| |  ||||||||||| || |||||||| |||||||||||    
T  9579487 aaatgaaacctcacatcaatgtgtttacttcttccatgtagaactggattttttgacaatttaatagttgaactgtt 9579563  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 340
Target Start/End: Complemental strand, 20545458 - 20545415
Alignment:
Q  297 aaccttacatctatatgtttacttctaccatgcatgactggatt 340  Q
    ||||| |||||||||||||| | |||||||||||||||||||||    
T  20545458 aacctgacatctatatgtttgcatctaccatgcatgactggatt 20545415  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 373
Target Start/End: Complemental strand, 34591232 - 34591153
Alignment:
Q  294 tggaaccttacatctatatgtttacttctaccatgcatgactggatttttggataatttaattgttgaactgttgtcaca 373  Q
    |||||||| ||||| || |||||||| || |||||||||||||||||||| || || ||  ||| |||||| ||||||||    
T  34591232 tggaacctgacatcaatgtgtttactccttccatgcatgactggatttttcgacaactttgttgatgaactattgtcaca 34591153  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 374
Target Start/End: Complemental strand, 47144794 - 47144702
Alignment:
Q  282 tctctcaagaaatggaaccttacatctatatgtttacttctaccatgcatgactggatttttggataatttaattgttgaactgttgtcacac 374  Q
    ||||| |||||||| ||||| ||||||||||| || | ||| |||||||| |||||||| || ||||  || |||| ||| || |||||||||    
T  47144794 tctcttaagaaatgaaacctcacatctatatgcttgcatctcccatgcataactggattcttagatagctttattgatgagctattgtcacac 47144702  T

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