View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2329_low_9 (Length: 477)
Name: NF2329_low_9
Description: NF2329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2329_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 198 - 446
Target Start/End: Complemental strand, 7187180 - 7186930
Alignment:
| Q |
198 |
caatagtatgaa-cgaattagtggggctgaatttattcccacataactagaccacaagtacttgttgttttcgaaagatataaacatgatatctccattc |
296 |
Q |
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| T |
7187180 |
caatagtatgaaacgaatgagtggggctgaatttattcccacataactagacaacaagtacttgttgttttcgaaagatataagcatgatatctccattc |
7187081 |
T |
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| Q |
297 |
taaatcgaatattcctgcactttaaactaataggtttaattatacttgaaacttatagcttgattgtctatcgttttagtctttattttttatttgtcca |
396 |
Q |
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| T |
7187080 |
taaatcgaatattcctgcactttaaactaataggtttaattatacttgaaacttatagcttgattgtctatcgttttagtctttattttttatttgtcca |
7186981 |
T |
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| Q |
397 |
gtagtttggtgctagaaaatcat-ttttaaggttactaaccgagaaatttg |
446 |
Q |
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| T |
7186980 |
gtagtttggtgttagaaaatcatcttttaaggttaataacggagaaatttg |
7186930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 7187392 - 7187304
Alignment:
| Q |
20 |
aataatgttaata----atatgtggcacgttttagtttatgctgcttctatgtgttgtgcacgtatcttctactagtacgacttcaagt |
104 |
Q |
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| T |
7187392 |
aataatgttaataatatatatgtggcacgttttagtttatgctgcttctacgtgttgtgcacgtatcttctactagtacgacttcaagt |
7187304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 343
Target Start/End: Complemental strand, 7175610 - 7175498
Alignment:
| Q |
230 |
tattcccacataactagaccacaagtacttgttgttttcgaaagatataaacatgatatctccattctaaa-tcgaatattcctgcactttaaactaata |
328 |
Q |
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| T |
7175610 |
tattcccacattactagactacaagtacttgttgctttcggaagatataagcatgctattt--attctaaattcgatttttactgcagtttaaaaatata |
7175513 |
T |
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| Q |
329 |
ggtttaattatactt |
343 |
Q |
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| T |
7175512 |
ggtttaattatactt |
7175498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 7187275 - 7187228
Alignment:
| Q |
103 |
gtgaacgaaggataattggcgaggaatatccaaatggtccttgtattg |
150 |
Q |
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| T |
7187275 |
gtgaatgaaagataattggcgaggaatatccaaatggtccttgtattg |
7187228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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