View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2330_high_2 (Length: 462)
Name: NF2330_high_2
Description: NF2330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2330_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Complemental strand, 29428736 - 29428287
Alignment:
| Q |
1 |
aagaaactgaaaactctatcaaaccatgtgaatatgtaaccaaagaacaatgacattgaaactttattgttccaataaagatacacaaatttacacacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29428736 |
aagaaactgaaaactctatcaaaccatgtgaatatgtaactaaagaacaatgacattgaaactttattgttccaataaagatacacaaatttacacacac |
29428637 |
T |
|
| Q |
101 |
agaaaatatatnnnnnnntcaaacattttgtggtggtgtaacatcctcagaaggcctagttgaaatgttcaattttctacctctttcacttctactatta |
200 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29428636 |
aaaaaatatataaaaaaatcaaacattttgtggtggtgtaacatcttcagaaggcctagttgaaatgttcaattttctacctctttcacttctactatta |
29428537 |
T |
|
| Q |
201 |
tcagcaaatttcaagctaccatgatgagaccctttctccttctcctttgagttccattcagccaaatagtaatcttcttctgtgacttttgtagatgatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29428536 |
tcagcaaatttcaagctaccatgatgagaccctttctccttctcctttgagttccattcagccaaatagtaatcttcttctgtgacttttgtagatgatg |
29428437 |
T |
|
| Q |
301 |
gaccaaaaaacatgccaccccattgtggaaaatagattaagaataatggtaaggtgcatattatgatcatggctcccattagtgttattcctctttcttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29428436 |
gaccaaaaaacatgccaccccattgtggaaaatagattaagaataatggtaaggtgcatattatgatcatggctcccattagtgttattcctctttcttt |
29428337 |
T |
|
| Q |
401 |
tgaaaatcttgatcctttgnnnnnnnttagttttgttagaactgctccta |
450 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
29428336 |
tgaaaatcttgatcctttgaagaaaattagttgggttagaactgctccta |
29428287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University