View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2330_high_6 (Length: 325)
Name: NF2330_high_6
Description: NF2330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2330_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 317
Target Start/End: Original strand, 42890275 - 42890577
Alignment:
| Q |
17 |
aacaccatctgtaggtatccagatatatgagattttaggggaatatatttagatttcaggaacttaaaatattgaaatattcaatcttaaaacaacaaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42890275 |
aacaccatctgtaggtatccagatatatgagattttaggggaatatatttagatttcaggaacttaaaatattgaaatattcaatcttaaaacaacaaca |
42890374 |
T |
|
| Q |
117 |
aaggctttgcactagatggggctagttacacaaataaatcaacactctaggctcctcaaaaactannnnnnnaacagattcatttagagtcaggtcgttt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42890375 |
aaggctttgcactagatggggctagttacacaaataaatcaacactttaggctcctcaaaaactatttttttaacagattcatttagagtcaggtcgttt |
42890474 |
T |
|
| Q |
217 |
ataactgtttcttataaag--tacctataaagcatatttttctattggactatctatcacctgattaacttttatcacaagagccttgactaatcttctt |
314 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42890475 |
ataactgtttcttataaagtatacctataaagcatatttttctattcgactatctatcacctgattaacttttatcacaagagccttgactaatcttctt |
42890574 |
T |
|
| Q |
315 |
ctc |
317 |
Q |
| |
|
||| |
|
|
| T |
42890575 |
ctc |
42890577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University