View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2330_high_9 (Length: 255)
Name: NF2330_high_9
Description: NF2330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2330_high_9 |
 | |
|
| [»] chr5 (6 HSPs) |
| |
|
| [»] chr4 (4 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 9 - 255
Target Start/End: Original strand, 1758067 - 1758313
Alignment:
| Q |
9 |
acatcatcaatgcttcatcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcattctt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1758067 |
acatcatcaatgcttcatcatcactctcacaaaaactctgtcaaacgccgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcattctt |
1758166 |
T |
|
| Q |
109 |
ttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgcccttagccgctgtgtctctgatccatgcac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1758167 |
ttgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtctccgcgggaatgctcttagccgctgtgtctctgatccatgcac |
1758266 |
T |
|
| Q |
209 |
ctcgccagatcaatccattccggtaaaagggctgtcaactgctttgc |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1758267 |
ctcgccagatcaatccattccggtaaaagggctatcaactgctttgc |
1758313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 23 - 255
Target Start/End: Complemental strand, 29568536 - 29568304
Alignment:
| Q |
23 |
tcatcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcattcttttgacgcaagcaat |
122 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| ||||||||||||||| ||||||||||||| |||| ||||||||||||||| |||||||||||| |
|
|
| T |
29568536 |
tcatcatcacactcacaaaaactctttcaaacgccattcaccatcatcatcttctgctcaccaactatcatccaagaagcattctttcgacgcaagcaat |
29568437 |
T |
|
| Q |
123 |
ctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgcccttagccgctgtgtctctgatccatgcacctcgccagatcaat |
222 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
29568436 |
ctcacccgtaatggcttctccgccattacacttcctttcagtctccgtgggaatgctcttagccgctgtgtctctgatccatgcaccttgccggatcaat |
29568337 |
T |
|
| Q |
223 |
ccattccggtaaaagggctgtcaactgctttgc |
255 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
29568336 |
ccatgccggtaaaagggctgtcaactgctttgc |
29568304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 9 - 255
Target Start/End: Original strand, 29168171 - 29168420
Alignment:
| Q |
9 |
acatcatcaatgcttcatcatca---ctctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcatt |
105 |
Q |
| |
|
||||||||||||||||||||||| | ||||||| |||||||||||||| |||||||||||||||| ||||||||||||| |||| ||| ||||||| |
|
|
| T |
29168171 |
acatcatcaatgcttcatcatcatcacactcacaacaactctgtcaaacgtcgttcaccatcatcatcttctgctcaccaactatcatccaataagcatt |
29168270 |
T |
|
| Q |
106 |
cttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgcccttagccgctgtgtctctgatccatg |
205 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||| |
|
|
| T |
29168271 |
ctttcaacgcaagcaatctcacccgtaatggcttctccaccattacacttcctttcagtctccgtgggaatgctcttagctgctgtgtctctgatccatg |
29168370 |
T |
|
| Q |
206 |
cacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgc |
255 |
Q |
| |
|
||||| ||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29168371 |
caccttgccggatcaatccatgccggtaaaagggctgtcaactgctttgc |
29168420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 29 - 255
Target Start/End: Original strand, 29425232 - 29425461
Alignment:
| Q |
29 |
tcactctcacaaaaactctgtcaaacgctgttcacc---atcatcatcatctgctcaccaaccatcactcaagaagcattcttttgacgcaagcaatctc |
125 |
Q |
| |
|
|||| ||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29425232 |
tcacactcacaacaactctgtcaaacgccgttcaccaccatcatcatcatctgctcaccaaccatcatccaagaagcattcttttgacgcaagcaatctc |
29425331 |
T |
|
| Q |
126 |
acccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgcccttagccgctgtgtctctgatccatgcacctcgccagatcaatcca |
225 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
29425332 |
atgcgtaatggcttctctgccattacacttcctttcagtctccgtgggaatgctcttagccgctgtgtctctgatccatgcaccttgccgaatcaatcca |
29425431 |
T |
|
| Q |
226 |
ttccggtaaaagggctgtcaactgctttgc |
255 |
Q |
| |
|
| ||||||||||||| |||||||||||||| |
|
|
| T |
29425432 |
tgccggtaaaagggccgtcaactgctttgc |
29425461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 23 - 255
Target Start/End: Original strand, 27918583 - 27918815
Alignment:
| Q |
23 |
tcatcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcattcttttgacgcaagcaat |
122 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||| |||||||||||||||| ||||||||||||| |||| |||||||||||||| || |||||||||| |
|
|
| T |
27918583 |
tcatcatcacactcacaacaactctgtcaaacgcagttcaccatcatcatcttctgctcaccaactatcatccaagaagcattcttctggcgcaagcaat |
27918682 |
T |
|
| Q |
123 |
ctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgcccttagccgctgtgtctctgatccatgcacctcgccagatcaat |
222 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| || || || ||| | ||||||| || ||||||||||| | ||||||||||| |
|
|
| T |
27918683 |
ctcacccgtaatggcttctccgccattacacttcctttcagtctccgtggcaacgctcttcactgctgtgtatccgatccatgcactttgccagatcaat |
27918782 |
T |
|
| Q |
223 |
ccattccggtaaaagggctgtcaactgctttgc |
255 |
Q |
| |
|
|||||||||| |||||| ||| |||||||||| |
|
|
| T |
27918783 |
ccattccggttaaagggtcgtcgactgctttgc |
27918815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 24 - 178
Target Start/End: Complemental strand, 29569866 - 29569712
Alignment:
| Q |
24 |
catcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcattcttttgacgcaagcaatc |
123 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |
|
|
| T |
29569866 |
catcatcacactcacaacaactctgtcaaacgccgttcaccatcatcatcatctgctcaccaactatcatccaagaagcattcttccgacgcaagcaatc |
29569767 |
T |
|
| Q |
124 |
tcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgc |
178 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| || ||||| |
|
|
| T |
29569766 |
tcacccgtaatggcttctccgccattacacttcctttcagtctccgtggcaatgc |
29569712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 255
Target Start/End: Complemental strand, 27521516 - 27521270
Alignment:
| Q |
9 |
acatcatcaatgcttcatcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcattctt |
108 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
27521516 |
acatcatcaatgcttcatcatcacactcacaacaactctgtcaaacgccgttcaccatcatcatcatctgcccaccaaccatcatccaagaagcattctt |
27521417 |
T |
|
| Q |
109 |
ttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgcccttagccgctgtgtctctgatccatgcac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
27521416 |
ttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgctcttagccgctgtgtctctgatccttgcac |
27521317 |
T |
|
| Q |
209 |
ctcgccagatcaatccattccggtaaaagggctgtcaactgctttgc |
255 |
Q |
| |
|
|| ||| ||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
27521316 |
cttgccggatcaatccatgccggtaaaagggccgtcaactgctttgc |
27521270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 9 - 255
Target Start/End: Original strand, 18986019 - 18986265
Alignment:
| Q |
9 |
acatcatcaatgcttcatcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcattctt |
108 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
18986019 |
acatcatcaatgcttcatcatcaccctcacaacaacactgtcaaactctgttcaccatcatcatcatctgctcaccaaccgtcatccaagaagcattctt |
18986118 |
T |
|
| Q |
109 |
ttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgcccttagccgctgtgtctctgatccatgcac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
18986119 |
ttgacgcaagcaatctcacccgtaatggcttctccgccattacactttctttcagtctccgtgggaatactcttagccgctgtgtctctgatccatgcac |
18986218 |
T |
|
| Q |
209 |
ctcgccagatcaatccattccggtaaaagggctgtcaactgctttgc |
255 |
Q |
| |
|
|| ||| ||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
18986219 |
cttgccggatcaatccatgccggtaaaagggccgtcaactgctttgc |
18986265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 9 - 255
Target Start/End: Original strand, 27461919 - 27462165
Alignment:
| Q |
9 |
acatcatcaatgcttcatcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcattctt |
108 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
27461919 |
acatcatcaatgcttcatcatcacactcacaacaacactgtcaaacgccgttcaccatcatcatcatcttatcaccaaccatcatccaagaagcattctt |
27462018 |
T |
|
| Q |
109 |
ttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgcccttagccgctgtgtctctgatccatgcac |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27462019 |
ttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgtggaaatgctcttagccgctgtgtctctgatccatgcac |
27462118 |
T |
|
| Q |
209 |
ctcgccagatcaatccattccggtaaaagggctgtcaactgctttgc |
255 |
Q |
| |
|
|| || ||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
27462119 |
ctttccggatcaatccatgccggtaaaagggccgtcaactgctttgc |
27462165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 9 - 255
Target Start/End: Original strand, 27482058 - 27482304
Alignment:
| Q |
9 |
acatcatcaatgcttcatcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcattctt |
108 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
27482058 |
acatcatcaatgcctcatcatcacactcacaacaacactgtcaaacgccgttcaccatcatcatcatcttatcaccaaccatcatccaagaagcattctt |
27482157 |
T |
|
| Q |
109 |
ttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgcccttagccgctgtgtctctgatccatgcac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27482158 |
ttgacgcaagcaatctcacccgtaatggcttctctgccattacaattcctttcagtctccgcgggaatgctcttagccgctgtgtctctgatccatgcac |
27482257 |
T |
|
| Q |
209 |
ctcgccagatcaatccattccggtaaaagggctgtcaactgctttgc |
255 |
Q |
| |
|
|| || ||||||||||| || |||||||||| |||||||||||||| |
|
|
| T |
27482258 |
ctttccggatcaatccatgccagtaaaagggccgtcaactgctttgc |
27482304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 9 - 255
Target Start/End: Original strand, 25518400 - 25518649
Alignment:
| Q |
9 |
acatcatcaatgctt---catcatcactctcacaaaaactctgtcaaacgctgttcaccatcatcatcatctgctcaccaaccatcactcaagaagcatt |
105 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| ||||||||||||||| |||||||||||||||| ||| |||||||||||||| ||||||||||| |
|
|
| T |
25518400 |
acatcatcaatgcttggtcatcatcacactcacaacaactctgtcaaacgccgttcaccatcatcatcttctcctcaccaaccatcatccaagaagcatt |
25518499 |
T |
|
| Q |
106 |
cttttgacgcaagcaatctcacccgtaatggcttctctgccattacacttcctttcagtctccgcgggaatgcccttagccgctgtgtctctgatccatg |
205 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || || ||||| ||| || |||||||| |||||||||| |
|
|
| T |
25518500 |
ctttcgacgcaagcaatctcacccgtaatggcttctccgccattacacttcctttcagtcttcgtggtaatgctcttcgctgctgtgtcgctgatccatg |
25518599 |
T |
|
| Q |
206 |
cacctcgccagatcaatccattccggtaaaagggctgtcaactgctttgc |
255 |
Q |
| |
|
||||| ||| |||||| | || ||||| |||||| ||| |||||||||| |
|
|
| T |
25518600 |
caccttgccggatcaagctatgccggttaaagggtcgtcgactgctttgc |
25518649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University