View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2330_low_12 (Length: 252)
Name: NF2330_low_12
Description: NF2330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2330_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 43620497 - 43620267
Alignment:
| Q |
9 |
catcatcaaatattatgaggggtgacttgcctcctaattcaagtgaaacatgtttcaagttactcttagctgcagcttgcattatctcacgcccagtttg |
108 |
Q |
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| T |
43620497 |
catcatcaaatattatgaggggtgacttgcctcctaattcaagtgaaacatgtttcaagttactcttagctgcagcttgcattatctcacgcccagtttg |
43620398 |
T |
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| Q |
109 |
tgttgaaccagtaaagctaacctaaacatacataaaaaattaaagcaatattatatattcaacatc---atggtccatgttttgatgtcccagtctccca |
205 |
Q |
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| T |
43620397 |
tgttgaaccagtaaagctaacctaaacatacataaaaaattaaagcaatattatatattcaacatcaatatggtccatgttttgatgtcccagtctccca |
43620298 |
T |
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| Q |
206 |
gccagagtgacatcgattatcaactacattt |
236 |
Q |
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| T |
43620297 |
gccagagtgacatcgattatcaactacattt |
43620267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 43627125 - 43627035
Alignment:
| Q |
9 |
catcatcaaatattatgaggggtgacttgcctcctaattcaagtgaaacatgtttcaagttactcttagctgcagcttgcattatctcacg |
99 |
Q |
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| T |
43627125 |
catcatcgaaaattatgagaggtgacttgcctcctaattcaagtgaaacatgttttaaattactcttagctgcagcttgcattatttcacg |
43627035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 32407441 - 32407515
Alignment:
| Q |
9 |
catcatcaaatattatgaggggtgacttgcctcctaattcaagtgaaacatgtttcaagttactcttagctgcag |
83 |
Q |
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|||||||||| |||| ||||||||| || |||||||||||||||||||| ||||||| ||||| ||||||||| |
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| T |
32407441 |
catcatcaaaaattaagaggggtgattttcctcctaattcaagtgaaactggtttcaaattacttctagctgcag |
32407515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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