View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2330_low_3 (Length: 420)
Name: NF2330_low_3
Description: NF2330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2330_low_3 |
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| [»] scaffold0188 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 401
Target Start/End: Original strand, 50980817 - 50981199
Alignment:
| Q |
19 |
ttgattgttgctattataccaaggtgaatgcattagaacaatcaaccaaggagtttctgtcctgttaactttaggtagctcttgttcaagccattggtac |
118 |
Q |
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| T |
50980817 |
ttgattgttgctattataccaaggtgaatgcattagaacaatcaaccaaggagtttctgtcctgttaactttaggtagctcttgttcaagccattggtac |
50980916 |
T |
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| Q |
119 |
tgtggtgtatattttccatatgctgaatacgaggccaagacaatgatgtgagctgaagctcttctgatagaataccaaaagggtgaagtactttgtgatg |
218 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50980917 |
tgtggtgtatattttccatatcctgaatacgaggccaagacaatgatgtgagctgaagctcttctgatagaataccaaaagggtgaagtactttgtgatg |
50981016 |
T |
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| Q |
219 |
ctttataaggagtgtggtatcggtgcgaataaggtttgaatggtttggtttcgccaatttctggggcaaaatcaatttcatggtttcctacagtccatat |
318 |
Q |
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| T |
50981017 |
ctttataaggagtgtggtatcggtgcgaataaggtttgaatggtttggtttcgccaatttctggggcaaaatcaatttcatggtttcctacagtccatat |
50981116 |
T |
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| Q |
319 |
ccacggctgataagccgtgctcctttctacaaaccttccccaagtatcccacctaacattgtcatgatttggaaagttatctg |
401 |
Q |
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| T |
50981117 |
ccacggctgataagccgtgctcctttctacaaaccttccccaagtatcccacctaacattgtcatgatttggaaagttatctg |
50981199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 134 - 263
Target Start/End: Complemental strand, 10526 - 10397
Alignment:
| Q |
134 |
ccatatgctgaatacgaggccaagacaatgatgtgagctgaagctcttctgatagaataccaaaagggtgaagtactttgtgatgctttataaggagtgt |
233 |
Q |
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| T |
10526 |
ccatatgctgaatacgaggccaagacaatgatatgtgctgaagctcttttgatagaataccaaaagggtgaagtactttgtgatgctttatacggcgttt |
10427 |
T |
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| Q |
234 |
ggtatcggtgcgaataaggtttgaatggtt |
263 |
Q |
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|||||||||||||| |||| |||||||||| |
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| T |
10426 |
ggtatcggtgcgaaaaaggcttgaatggtt |
10397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 273 - 401
Target Start/End: Complemental strand, 10237 - 10109
Alignment:
| Q |
273 |
caatttctggggcaaaatcaatttcatggtttcctacagtccatatccacggctgataagccgtgctcctttctacaaaccttccccaagtatcccacct |
372 |
Q |
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| T |
10237 |
caatttctggagcaaaatcaagttcatggtttccaacagtccatatccacggttgataagcaacgctcctttctgcaaatcttccccaagtatcccacct |
10138 |
T |
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| Q |
373 |
aacattgtcatgatttggaaagttatctg |
401 |
Q |
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| T |
10137 |
aacattgtcatgattcgggtagttatctg |
10109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 24 - 135
Target Start/End: Complemental strand, 11094 - 10983
Alignment:
| Q |
24 |
tgttgctattataccaaggtgaatgcattagaacaatcaaccaaggagtttctgtcctgttaactttaggtagctcttgttcaagccattggtactgtgg |
123 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||| | ||||||||||| | |||||||||| ||||||||| ||| ||||| |
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| T |
11094 |
tgttgctattataccaaggtgaatgcatgagaacaatcaaccacggagtttttttcctgttaactctcggtagctcttcttcaagccacgcgtattgtgg |
10995 |
T |
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| Q |
124 |
tgtatattttcc |
135 |
Q |
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|||||||||||| |
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| T |
10994 |
tgtatattttcc |
10983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 13640346 - 13640233
Alignment:
| Q |
22 |
attgttgctattataccaaggtgaatgcattagaacaatcaaccaaggagtttctgtcctgttaactttaggtagctcttgttcaagccattggtactgt |
121 |
Q |
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||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| ||| |
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| T |
13640346 |
attgtagctattataccaaggtgaatgcatgagaacaatcaaccaaggagtttctgtcctgttaacttttggtagctcctgttcaagccatttgtattgt |
13640247 |
T |
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| Q |
122 |
ggtgtatattttcc |
135 |
Q |
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|||||||||||||| |
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| T |
13640246 |
ggtgtatattttcc |
13640233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 273 - 401
Target Start/End: Complemental strand, 13638915 - 13638787
Alignment:
| Q |
273 |
caatttctggggcaaaatcaatttcatggtttcctacagtccatatccacggctgataagccgtgctcctttctacaaaccttccccaagtatcccacct |
372 |
Q |
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|||||||||| |||||||||| |||||||||||| ||||||||||||||||| |||||||| |||||||||| |||| |||||||||||||||||||| |
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| T |
13638915 |
caatttctggagcaaaatcaagttcatggtttccaacagtccatatccacggttgataagcaacgctcctttctgcaaatcttccccaagtatcccacct |
13638816 |
T |
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| Q |
373 |
aacattgtcatgatttggaaagttatctg |
401 |
Q |
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| T |
13638815 |
aacattgtcatgattcgggtagttatctg |
13638787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 134 - 270
Target Start/End: Complemental strand, 13639202 - 13639066
Alignment:
| Q |
134 |
ccatatgctgaatacgaggccaagacaatgatgtgagctgaagctcttctgatagaataccaaaagggtgaagtactttgtgatgctttataaggagtgt |
233 |
Q |
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|||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||||||||||| || |||||||| |||||||| |||||||| |
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| T |
13639202 |
ccatatgctgaatatgaagccaacacaatgatgtgagctgaagctctcttgatagaataccaaaagggcgaggtactttgcgatgctttgtaaggagtac |
13639103 |
T |
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| Q |
234 |
ggtatcggtgcgaataaggtttgaatggtttggtttc |
270 |
Q |
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||||||||||||| ||||| ||||||||||| ||||| |
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| T |
13639102 |
ggtatcggtgcgagtaaggcttgaatggttttgtttc |
13639066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 10478798 - 10478895
Alignment:
| Q |
134 |
ccatatgctgaatacgaggccaagacaatgatgtgagctgaagctcttctgatagaataccaaaagggtgaagtactttgtgatgctttataaggagt |
231 |
Q |
| |
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|||||||||||||| ||||| |||||||| ||||| ||||||||||| |||||||||| ||||| ||| ||||||| ||||||||||||||||| |
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| T |
10478798 |
ccatatgctgaatatgaggctaagacaataatgtgtgctgaagctctcttgatagaatatgaaaagtgtgggctactttgcgatgctttataaggagt |
10478895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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