View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2330_low_4 (Length: 372)
Name: NF2330_low_4
Description: NF2330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2330_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 38750539 - 38750180
Alignment:
| Q |
1 |
atgaaatcactttgtgaacatatatatata--cattcgaccgaacatacattatactttcaagtttcaactgatacagacaggtttcttttatgacgaaa |
98 |
Q |
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| T |
38750539 |
atgaaatcactttgtgaacatatatatatatacattcgaccgaacatacattatactttcaagtttcaactgatacagacaggtttcttttatgacgaaa |
38750440 |
T |
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| Q |
99 |
tcgtagagattagctagaatggagttgttcaccaaaaagtatactgttttgattggnnnnnnnnn-ttatacaacaattatactattttgatgaagaagg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38750439 |
tcgtagagattagctagaatggagttgttcaccaaaaagtatactgttttgattggaaaaaaaaaattatacaacaattatactattttgatgaagaagg |
38750340 |
T |
|
| Q |
198 |
aaaaatgtgcgtgttcgctattttgataattcttgaatgacccatcacaattaaaaaatcaatatttttgtctcttcaatgcgtagcaaatgaacaaata |
297 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38750339 |
aaaaatgtgcgtgttcgctgttttgataattcttgaatgacccatcacaattaaaaaatcaatatttttgtctcttcaatgcgtagcaaatgaacaaata |
38750240 |
T |
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| Q |
298 |
ctactgcctttgtccatatatagtttatgtaatcaatttcgtccctatacgtaatactac |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38750239 |
ttactgcctttgtccatatatagtttatgtaatcaatttcgtccctatacgtaatactac |
38750180 |
T |
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