View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2330_low_5 (Length: 346)
Name: NF2330_low_5
Description: NF2330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2330_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 338
Target Start/End: Original strand, 36209603 - 36209923
Alignment:
| Q |
18 |
acaatatgttatactatttagcaaacaatgacttgttaacagaaccaaccataccaaacatagttcaaaccatcttattagagaggaaggtgaattcttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36209603 |
acaatatgttatactatttagcaaacaatgacttgttaacagaaccaaccataccaaacatagttcaaaccatcttattagagaggaaggtgaattcttc |
36209702 |
T |
|
| Q |
118 |
cctccctttaaagaaccacagaggaaattactgcaagaaacaagggaaatcttaccataatggatacatgtatcggacataatacaaacacaagcatttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36209703 |
cctccctttaaagaaccacagaggaaattactgcaagaaacaagggaaatcttaccataatggatacatgtatcggacataatacaaacacaagcatttg |
36209802 |
T |
|
| Q |
218 |
acagaatacaaaatcttagttcatctataactgcaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttcgactt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36209803 |
acagaatacaaaatcttagttcatctataactgcaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttcgactt |
36209902 |
T |
|
| Q |
318 |
cagattttcatcatctctgct |
338 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
36209903 |
cagattttcatcatctctgct |
36209923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 338
Target Start/End: Original strand, 36188159 - 36188482
Alignment:
| Q |
18 |
acaatatgttatactatttagcaaacaatgacttgttaaca---gaaccaaccataccaaacatagttcaaaccatcttattagagaggaaggtgaattc |
114 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
36188159 |
acaatatgttatactatttagcaaaccatgacttgttaacaacagaacaaaccataccaaacctagttcaaaccattttattagagaggaaggtgaattc |
36188258 |
T |
|
| Q |
115 |
ttccctccctttaaagaaccacagaggaaattactgcaagaaacaagggaaatcttaccataatggatacatgtatcggacataatacaaacacaagcat |
214 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
36188259 |
ccccctccctttaaagagccacagaggaaattactgcaagaaa-aagggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcat |
36188357 |
T |
|
| Q |
215 |
ttgacagaatacaaaatcttagttcatctataactgc-aaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttcg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36188358 |
ttgacagaatacaaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttgg |
36188457 |
T |
|
| Q |
314 |
acttcagattttcatcatctctgct |
338 |
Q |
| |
|
|||| ||||||||||||||||||| |
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|
| T |
36188458 |
acttatgattttcatcatctctgct |
36188482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 338
Target Start/End: Original strand, 36196480 - 36196800
Alignment:
| Q |
18 |
acaatatgttatactatttagcaaacaatgacttgttaacagaaccaaccataccaaacatagttcaaaccatcttattagagaggaaggtgaattcttc |
117 |
Q |
| |
|
|||||||| |||||||||||||||| | |||||||||||||||| ||||||| |||||||||||||||||||| |||| | ||| ||| |||||||| || |
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|
| T |
36196480 |
acaatatgctatactatttagcaaa-agtgacttgttaacagaagcaaccattccaaacatagttcaaaccattttatcaaagaagaaagtgaattcctc |
36196578 |
T |
|
| Q |
118 |
cctccctttaaagaaccacagaggaaattactgcaagaaacaagggaaatcttaccataatggatacatgtatcggacataatacaaacacaagcatttg |
217 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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|
| T |
36196579 |
cctccctttaaagaaccacagacgaaattactgcaagaaacaggggaaatcttaccataatggatacatgtctcggatataatacaaacacaagcatttg |
36196678 |
T |
|
| Q |
218 |
acagaatacaaaatcttagttcatctataactgc-aaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttcgact |
316 |
Q |
| |
|
||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
36196679 |
acagaatacaaaatcttagttcatctatacctacaaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttggact |
36196778 |
T |
|
| Q |
317 |
tcagattttcatcatctctgct |
338 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
36196779 |
tatgattttcatcatctctgct |
36196800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 36184219 - 36184376
Alignment:
| Q |
18 |
acaatatgttatactatttagcaaacaatgacttgttaacagaaccaaccataccaaacatagttcaaaccatcttattagagaggaaggtgaattcttc |
117 |
Q |
| |
|
||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| | ||||| |
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|
| T |
36184219 |
acaatatgttatactatttagcaaa-agtgacatgttaacagaaccaaccataccaaacatagttcaaaccattttatcgaagaggaagttaaattccct |
36184317 |
T |
|
| Q |
118 |
cctccctttaaagaaccacagaggaaattactgcaagaaacaagggaaatcttaccata |
176 |
Q |
| |
|
|||||||| |||||||| ||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36184318 |
cctcccttgaaagaaccgcagtggaaattactgcaagaaacaagtgaaatcttaccata |
36184376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 33 - 174
Target Start/End: Original strand, 36200404 - 36200545
Alignment:
| Q |
33 |
atttagcaaacaatgacttgttaacagaaccaaccataccaaacatagttcaaaccatcttattagagaggaaggtgaattcttccctccctttaaagaa |
132 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||| ||||||||| || || | | ||||||| |||||||| || ||| |||| ||| |
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|
| T |
36200404 |
atttagcaaacaacgacttgttaacagaactaaccataccaaaccgagttcaaactattttgtcaaagaggaaagtgaattcctctctctcttttctgaa |
36200503 |
T |
|
| Q |
133 |
ccacagaggaaattactgcaagaaacaagggaaatcttacca |
174 |
Q |
| |
|
||||| |||||| || ||||||||||||| |||||||||||| |
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|
| T |
36200504 |
ccacataggaaaataatgcaagaaacaagagaaatcttacca |
36200545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 200 - 335
Target Start/End: Original strand, 36207688 - 36207824
Alignment:
| Q |
200 |
tacaaacacaagcatttgacagaata-caaaatcttagttcatctataactgcaaagcacttctcaacctctaatctctccaacatggtgttttccaaac |
298 |
Q |
| |
|
||||| ||||||||||| |||||| | |||||||||||||||| || ||| |||| ||| | | |||||||||||||||||||||||||||||| | | |
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|
| T |
36207688 |
tacaagcacaagcatttaacagaaaaacaaaatcttagttcatatacaacaacaaatcacatgtgaacctctaatctctccaacatggtgttttcgatat |
36207787 |
T |
|
| Q |
299 |
gatgtgcatgtttcgacttcagattttcatcatctct |
335 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| |||| |
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|
| T |
36207788 |
gatgtgcatgtttggacttcaaattttcatcaactct |
36207824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 200 - 338
Target Start/End: Original strand, 36184500 - 36184643
Alignment:
| Q |
200 |
tacaaacacaagcatttgacagaata-caaaatcttagttcatctataactgcaaagcacttctcaacctct----aatctctccaacatggtgttttcc |
294 |
Q |
| |
|
||||| ||||||||||| |||||| | ||||||||||||||||||| ||| |||||||||| | ||||||| ||||||||||||||||||| |||| |
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|
| T |
36184500 |
tacaagcacaagcatttaacagaaaaacaaaatcttagttcatctacaacaacaaagcacttgtgaacctctctctaatctctccaacatggtgtcttcc |
36184599 |
T |
|
| Q |
295 |
aaacgatgtgcatgtttcgacttcagattttcatcatctctgct |
338 |
Q |
| |
|
| ||| | ||||||| |||||||||||||||||| ||||||| |
|
|
| T |
36184600 |
gtatgatattcatgtttggacttcagattttcatcaactctgct |
36184643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 226 - 337
Target Start/End: Original strand, 36214722 - 36214833
Alignment:
| Q |
226 |
caaaatcttagttcatctataactgcaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttcgacttcagatttt |
325 |
Q |
| |
|
|||| ||||| || ||||||| | |||||||||| |||| |||||||||| ||||||| |||||||||||| | |||||||||| ||||||| ||||| |
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|
| T |
36214722 |
caaagtcttaattgatctataccaacaaagcacttgtcaatctctaatctccccaacattgtgttttccaaataaagtgcatgtttggacttcaaatttt |
36214821 |
T |
|
| Q |
326 |
catcatctctgc |
337 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
36214822 |
caccatctctgc |
36214833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 237 - 319
Target Start/End: Original strand, 36198878 - 36198960
Alignment:
| Q |
237 |
ttcatctataactgcaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgtttcgacttca |
319 |
Q |
| |
|
|||||||||| || ||||||||| ||| |||||||||||||||||| |||||||||||| ||||||||||||| ||||||| |
|
|
| T |
36198878 |
ttcatctatacctaaaaagcacttaccaatctctaatctctccaacattgtgttttccaaaggatgtgcatgtttagacttca |
36198960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 311
Target Start/End: Original strand, 36200857 - 36200943
Alignment:
| Q |
225 |
acaaaatcttagttcatctataactgcaaagcacttctcaacctctaatctctccaacatggtgttttccaaacgatgtgcatgttt |
311 |
Q |
| |
|
|||||||||||||||||||| | | || ||||| | |||||| |||||| ||||||||||||| |||||| | ||||||||||||| |
|
|
| T |
36200857 |
acaaaatcttagttcatctacaccaacacagcacctgtcaaccactaatcactccaacatggtgctttccatatgatgtgcatgttt |
36200943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 292 - 338
Target Start/End: Original strand, 36202310 - 36202356
Alignment:
| Q |
292 |
tccaaacgatgtgcatgtttcgacttcagattttcatcatctctgct |
338 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36202310 |
tccaaactatgttcatgtttcgacttcagattttcatcatctctgct |
36202356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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